miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33354 5' -58.6 NC_007605.1 + 30756 0.66 0.800764
Target:  5'- -cCCGAGguCCcagcACCCGGuCCCUcCGGGGg -3'
miRNA:   3'- caGGUUCguGG----UGGGUC-GGGA-GCUCU- -5'
33354 5' -58.6 NC_007605.1 + 54372 0.66 0.800764
Target:  5'- -cCCAGGCaACCGCCCcGCCCaggcuggccUCGGa- -3'
miRNA:   3'- caGGUUCG-UGGUGGGuCGGG---------AGCUcu -5'
33354 5' -58.6 NC_007605.1 + 133179 0.66 0.800764
Target:  5'- -cCCGgagAGCGCCAUCCuGCCagCGGGAg -3'
miRNA:   3'- caGGU---UCGUGGUGGGuCGGgaGCUCU- -5'
33354 5' -58.6 NC_007605.1 + 129564 0.66 0.791906
Target:  5'- -gCCAAGCGCUccaGCCCGuaggauugcauGCCCUUGAc- -3'
miRNA:   3'- caGGUUCGUGG---UGGGU-----------CGGGAGCUcu -5'
33354 5' -58.6 NC_007605.1 + 49966 0.67 0.782909
Target:  5'- uUCCAccCACCGCCucaucgCAGaCCUCGAGAg -3'
miRNA:   3'- cAGGUucGUGGUGG------GUCgGGAGCUCU- -5'
33354 5' -58.6 NC_007605.1 + 103562 0.67 0.782909
Target:  5'- aUCCGgcaAGCACCA-UCAGCCCggGGGGa -3'
miRNA:   3'- cAGGU---UCGUGGUgGGUCGGGagCUCU- -5'
33354 5' -58.6 NC_007605.1 + 140601 0.67 0.782909
Target:  5'- uGUCCcuuuGGguCUcaggACCCAGCCCUgGAGc -3'
miRNA:   3'- -CAGGu---UCguGG----UGGGUCGGGAgCUCu -5'
33354 5' -58.6 NC_007605.1 + 61121 0.67 0.773782
Target:  5'- aUCCGcgcGCGCCGuuuggCCGGCCCUCaGGGAc -3'
miRNA:   3'- cAGGUu--CGUGGUg----GGUCGGGAG-CUCU- -5'
33354 5' -58.6 NC_007605.1 + 115240 0.67 0.772862
Target:  5'- -cCCAccGGCGCUGCCCcggauguugcuggGGUUCUCGAGGg -3'
miRNA:   3'- caGGU--UCGUGGUGGG-------------UCGGGAGCUCU- -5'
33354 5' -58.6 NC_007605.1 + 155131 0.67 0.770096
Target:  5'- -gCCAGGCACaucuacagcaucaACCCAGCCuCUCuGGGc -3'
miRNA:   3'- caGGUUCGUGg------------UGGGUCGG-GAGcUCU- -5'
33354 5' -58.6 NC_007605.1 + 60508 0.67 0.7636
Target:  5'- cUCCAAGCugCcCCCGucaagcgcgagauGUCCUcCGAGAg -3'
miRNA:   3'- cAGGUUCGugGuGGGU-------------CGGGA-GCUCU- -5'
33354 5' -58.6 NC_007605.1 + 161979 0.67 0.755168
Target:  5'- uUCCAGGCGgCGCUCGGuCCCUguccccagCGGGGc -3'
miRNA:   3'- cAGGUUCGUgGUGGGUC-GGGA--------GCUCU- -5'
33354 5' -58.6 NC_007605.1 + 52264 0.67 0.754226
Target:  5'- uUCCuacGGCACCguuaccgGCCgGGCCCU-GAGAa -3'
miRNA:   3'- cAGGu--UCGUGG-------UGGgUCGGGAgCUCU- -5'
33354 5' -58.6 NC_007605.1 + 114361 0.67 0.74284
Target:  5'- aGUCCAGGgGCCACaCAGCCUgacucucauguacuUUGGGGu -3'
miRNA:   3'- -CAGGUUCgUGGUGgGUCGGG--------------AGCUCU- -5'
33354 5' -58.6 NC_007605.1 + 62140 0.67 0.739015
Target:  5'- cGUCCuGGCcuuugacGCCGCCCggcuccggcuuuuggAGCCCUCaGGGGc -3'
miRNA:   3'- -CAGGuUCG-------UGGUGGG---------------UCGGGAG-CUCU- -5'
33354 5' -58.6 NC_007605.1 + 136006 0.67 0.736136
Target:  5'- -gCCAGGCGugcagagccuCCACCUugGGUUCUCGAGGg -3'
miRNA:   3'- caGGUUCGU----------GGUGGG--UCGGGAGCUCU- -5'
33354 5' -58.6 NC_007605.1 + 71570 0.68 0.697093
Target:  5'- --gCAAGCGCCGacaCCuGCCCcCGGGAg -3'
miRNA:   3'- cagGUUCGUGGUg--GGuCGGGaGCUCU- -5'
33354 5' -58.6 NC_007605.1 + 71331 0.68 0.697093
Target:  5'- cUCUAGGCACC-CUgggGGCCCUUGGGGc -3'
miRNA:   3'- cAGGUUCGUGGuGGg--UCGGGAGCUCU- -5'
33354 5' -58.6 NC_007605.1 + 161276 0.68 0.697093
Target:  5'- -gCCugcuuGCGCaGCCCAGCCC-CGGGGg -3'
miRNA:   3'- caGGuu---CGUGgUGGGUCGGGaGCUCU- -5'
33354 5' -58.6 NC_007605.1 + 157654 0.68 0.68718
Target:  5'- aGUCCAucgcccccAGCcCCAUCCgcGGCCCgCGGGAg -3'
miRNA:   3'- -CAGGU--------UCGuGGUGGG--UCGGGaGCUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.