miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33354 5' -58.6 NC_007605.1 + 5733 0.69 0.627061
Target:  5'- uGUCCcccuAGCcCCggGCCCAGCCCUCcucAGAa -3'
miRNA:   3'- -CAGGu---UCGuGG--UGGGUCGGGAGc--UCU- -5'
33354 5' -58.6 NC_007605.1 + 10893 0.66 0.826423
Target:  5'- cUCCuuAGCcgaGCCGCCCGGCUcccggacgCUUGAGGg -3'
miRNA:   3'- cAGGu-UCG---UGGUGGGUCGG--------GAGCUCU- -5'
33354 5' -58.6 NC_007605.1 + 12342 0.66 0.800764
Target:  5'- -cCCGAGguCCcagcACCCGGuCCCUcCGGGGg -3'
miRNA:   3'- caGGUUCguGG----UGGGUC-GGGA-GCUCU- -5'
33354 5' -58.6 NC_007605.1 + 14702 0.69 0.647168
Target:  5'- cUCCuaagaAGGCACCggucGCCCAGUCCUaccaGAGGg -3'
miRNA:   3'- cAGG-----UUCGUGG----UGGGUCGGGAg---CUCU- -5'
33354 5' -58.6 NC_007605.1 + 15411 0.66 0.800764
Target:  5'- -cCCGAGguCCcagcACCCGGuCCCUcCGGGGg -3'
miRNA:   3'- caGGUUCguGG----UGGGUC-GGGA-GCUCU- -5'
33354 5' -58.6 NC_007605.1 + 17771 0.69 0.647168
Target:  5'- cUCCuaagaAGGCACCggucGCCCAGUCCUaccaGAGGg -3'
miRNA:   3'- cAGG-----UUCGUGG----UGGGUCGGGAg---CUCU- -5'
33354 5' -58.6 NC_007605.1 + 18480 0.66 0.800764
Target:  5'- -cCCGAGguCCcagcACCCGGuCCCUcCGGGGg -3'
miRNA:   3'- caGGUUCguGG----UGGGUC-GGGA-GCUCU- -5'
33354 5' -58.6 NC_007605.1 + 20840 0.69 0.647168
Target:  5'- cUCCuaagaAGGCACCggucGCCCAGUCCUaccaGAGGg -3'
miRNA:   3'- cAGG-----UUCGUGG----UGGGUCGGGAg---CUCU- -5'
33354 5' -58.6 NC_007605.1 + 21549 0.66 0.800764
Target:  5'- -cCCGAGguCCcagcACCCGGuCCCUcCGGGGg -3'
miRNA:   3'- caGGUUCguGG----UGGGUC-GGGA-GCUCU- -5'
33354 5' -58.6 NC_007605.1 + 23909 0.69 0.647168
Target:  5'- cUCCuaagaAGGCACCggucGCCCAGUCCUaccaGAGGg -3'
miRNA:   3'- cAGG-----UUCGUGG----UGGGUCGGGAg---CUCU- -5'
33354 5' -58.6 NC_007605.1 + 24618 0.66 0.800764
Target:  5'- -cCCGAGguCCcagcACCCGGuCCCUcCGGGGg -3'
miRNA:   3'- caGGUUCguGG----UGGGUC-GGGA-GCUCU- -5'
33354 5' -58.6 NC_007605.1 + 26977 0.69 0.647168
Target:  5'- cUCCuaagaAGGCACCggucGCCCAGUCCUaccaGAGGg -3'
miRNA:   3'- cAGG-----UUCGUGG----UGGGUCGGGAg---CUCU- -5'
33354 5' -58.6 NC_007605.1 + 27687 0.66 0.800764
Target:  5'- -cCCGAGguCCcagcACCCGGuCCCUcCGGGGg -3'
miRNA:   3'- caGGUUCguGG----UGGGUC-GGGA-GCUCU- -5'
33354 5' -58.6 NC_007605.1 + 30046 0.69 0.647168
Target:  5'- cUCCuaagaAGGCACCggucGCCCAGUCCUaccaGAGGg -3'
miRNA:   3'- cAGG-----UUCGUGG----UGGGUCGGGAg---CUCU- -5'
33354 5' -58.6 NC_007605.1 + 30756 0.66 0.800764
Target:  5'- -cCCGAGguCCcagcACCCGGuCCCUcCGGGGg -3'
miRNA:   3'- caGGUUCguGG----UGGGUC-GGGA-GCUCU- -5'
33354 5' -58.6 NC_007605.1 + 33115 0.69 0.647168
Target:  5'- cUCCuaagaAGGCACCggucGCCCAGUCCUaccaGAGGg -3'
miRNA:   3'- cAGG-----UUCGUGG----UGGGUCGGGAg---CUCU- -5'
33354 5' -58.6 NC_007605.1 + 33825 0.66 0.800764
Target:  5'- -cCCGAGguCCcagcACCCGGuCCCUcCGGGGg -3'
miRNA:   3'- caGGUUCguGG----UGGGUC-GGGA-GCUCU- -5'
33354 5' -58.6 NC_007605.1 + 40793 0.68 0.68718
Target:  5'- cUCCAGGUACCACCCA--CCUgGuGAc -3'
miRNA:   3'- cAGGUUCGUGGUGGGUcgGGAgCuCU- -5'
33354 5' -58.6 NC_007605.1 + 45088 0.66 0.826423
Target:  5'- cGUCCGGGUggGCC-CCgaGGCUCUCGcAGAg -3'
miRNA:   3'- -CAGGUUCG--UGGuGGg-UCGGGAGC-UCU- -5'
33354 5' -58.6 NC_007605.1 + 47059 0.66 0.818031
Target:  5'- -cCCAGGCaaggGCCGCuCUGGCCCgaucUGAGAc -3'
miRNA:   3'- caGGUUCG----UGGUG-GGUCGGGa---GCUCU- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.