miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33354 5' -58.6 NC_007605.1 + 49966 0.67 0.782909
Target:  5'- uUCCAccCACCGCCucaucgCAGaCCUCGAGAg -3'
miRNA:   3'- cAGGUucGUGGUGG------GUCgGGAGCUCU- -5'
33354 5' -58.6 NC_007605.1 + 52264 0.67 0.754226
Target:  5'- uUCCuacGGCACCguuaccgGCCgGGCCCU-GAGAa -3'
miRNA:   3'- cAGGu--UCGUGG-------UGGgUCGGGAgCUCU- -5'
33354 5' -58.6 NC_007605.1 + 54045 0.72 0.499104
Target:  5'- uGUCCAGGCuccccucgagGCCGCCCuGGCCCgggcagcggcCGGGAa -3'
miRNA:   3'- -CAGGUUCG----------UGGUGGG-UCGGGa---------GCUCU- -5'
33354 5' -58.6 NC_007605.1 + 54203 0.66 0.818031
Target:  5'- gGUCCGGGagaGCCagACCCugauggcgaaGGCCCaCGAGAu -3'
miRNA:   3'- -CAGGUUCg--UGG--UGGG----------UCGGGaGCUCU- -5'
33354 5' -58.6 NC_007605.1 + 54372 0.66 0.800764
Target:  5'- -cCCAGGCaACCGCCCcGCCCaggcuggccUCGGa- -3'
miRNA:   3'- caGGUUCG-UGGUGGGuCGGG---------AGCUcu -5'
33354 5' -58.6 NC_007605.1 + 59071 0.66 0.818031
Target:  5'- -gCCGAGCcuCCACuCCcGCCCcCGGGGg -3'
miRNA:   3'- caGGUUCGu-GGUG-GGuCGGGaGCUCU- -5'
33354 5' -58.6 NC_007605.1 + 60141 0.69 0.647168
Target:  5'- cUCCAgGGCGugcuCCACCCgcucguugAGCuCCUCGAGAu -3'
miRNA:   3'- cAGGU-UCGU----GGUGGG--------UCG-GGAGCUCU- -5'
33354 5' -58.6 NC_007605.1 + 60508 0.67 0.7636
Target:  5'- cUCCAAGCugCcCCCGucaagcgcgagauGUCCUcCGAGAg -3'
miRNA:   3'- cAGGUUCGugGuGGGU-------------CGGGA-GCUCU- -5'
33354 5' -58.6 NC_007605.1 + 61121 0.67 0.773782
Target:  5'- aUCCGcgcGCGCCGuuuggCCGGCCCUCaGGGAc -3'
miRNA:   3'- cAGGUu--CGUGGUg----GGUCGGGAG-CUCU- -5'
33354 5' -58.6 NC_007605.1 + 62140 0.67 0.739015
Target:  5'- cGUCCuGGCcuuugacGCCGCCCggcuccggcuuuuggAGCCCUCaGGGGc -3'
miRNA:   3'- -CAGGuUCG-------UGGUGGG---------------UCGGGAG-CUCU- -5'
33354 5' -58.6 NC_007605.1 + 65213 0.69 0.617009
Target:  5'- -aCCuguGCGCCgagguGCUgCAGCCCUCGAGGa -3'
miRNA:   3'- caGGuu-CGUGG-----UGG-GUCGGGAGCUCU- -5'
33354 5' -58.6 NC_007605.1 + 68769 0.66 0.834645
Target:  5'- cGUgCAAGCAgCACCUGuCCCUgGGGGc -3'
miRNA:   3'- -CAgGUUCGUgGUGGGUcGGGAgCUCU- -5'
33354 5' -58.6 NC_007605.1 + 69472 0.7 0.586949
Target:  5'- -gCCGAGCACCGgCCAGgCUUCcAGAg -3'
miRNA:   3'- caGGUUCGUGGUgGGUCgGGAGcUCU- -5'
33354 5' -58.6 NC_007605.1 + 71243 0.73 0.417592
Target:  5'- uUCCuuguGCuCCugCCGGCCCcUCGAGAu -3'
miRNA:   3'- cAGGuu--CGuGGugGGUCGGG-AGCUCU- -5'
33354 5' -58.6 NC_007605.1 + 71331 0.68 0.697093
Target:  5'- cUCUAGGCACC-CUgggGGCCCUUGGGGc -3'
miRNA:   3'- cAGGUUCGUGGuGGg--UCGGGAGCUCU- -5'
33354 5' -58.6 NC_007605.1 + 71570 0.68 0.697093
Target:  5'- --gCAAGCGCCGacaCCuGCCCcCGGGAg -3'
miRNA:   3'- cagGUUCGUGGUg--GGuCGGGaGCUCU- -5'
33354 5' -58.6 NC_007605.1 + 74844 0.7 0.596946
Target:  5'- gGUCCGGGCACuCAaaggucUCCGGCuCCUCaGGGAg -3'
miRNA:   3'- -CAGGUUCGUG-GU------GGGUCG-GGAG-CUCU- -5'
33354 5' -58.6 NC_007605.1 + 75633 0.66 0.808611
Target:  5'- uUCaCAAGCACCACCucaccuccuucuaCAGCCCccacagugacgCGGGGg -3'
miRNA:   3'- cAG-GUUCGUGGUGG-------------GUCGGGa----------GCUCU- -5'
33354 5' -58.6 NC_007605.1 + 77791 0.72 0.487804
Target:  5'- -cCCAGGCACCACCagccaagcgucaGGCCCUgGAa- -3'
miRNA:   3'- caGGUUCGUGGUGGg-----------UCGGGAgCUcu -5'
33354 5' -58.6 NC_007605.1 + 82168 0.66 0.800764
Target:  5'- -cCCAGGUGCCGCCCugAGCCa--GAGu -3'
miRNA:   3'- caGGUUCGUGGUGGG--UCGGgagCUCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.