miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33354 5' -58.6 NC_007605.1 + 168992 0.69 0.667229
Target:  5'- -aCCGGGC-CCGCgaCGGCCCccUCGAGGa -3'
miRNA:   3'- caGGUUCGuGGUGg-GUCGGG--AGCUCU- -5'
33354 5' -58.6 NC_007605.1 + 166957 0.74 0.375952
Target:  5'- -aCCAGGCcuaGCCACCCcuGCCC-CGAGGa -3'
miRNA:   3'- caGGUUCG---UGGUGGGu-CGGGaGCUCU- -5'
33354 5' -58.6 NC_007605.1 + 162751 0.79 0.196951
Target:  5'- uGUUCAGGCACacggccgggGCCCGGCCCUCGcAGAg -3'
miRNA:   3'- -CAGGUUCGUGg--------UGGGUCGGGAGC-UCU- -5'
33354 5' -58.6 NC_007605.1 + 161979 0.67 0.755168
Target:  5'- uUCCAGGCGgCGCUCGGuCCCUguccccagCGGGGc -3'
miRNA:   3'- cAGGUUCGUgGUGGGUC-GGGA--------GCUCU- -5'
33354 5' -58.6 NC_007605.1 + 161276 0.68 0.697093
Target:  5'- -gCCugcuuGCGCaGCCCAGCCC-CGGGGg -3'
miRNA:   3'- caGGuu---CGUGgUGGGUCGGGaGCUCU- -5'
33354 5' -58.6 NC_007605.1 + 157654 0.68 0.68718
Target:  5'- aGUCCAucgcccccAGCcCCAUCCgcGGCCCgCGGGAg -3'
miRNA:   3'- -CAGGU--------UCGuGGUGGG--UCGGGaGCUCU- -5'
33354 5' -58.6 NC_007605.1 + 155131 0.67 0.770096
Target:  5'- -gCCAGGCACaucuacagcaucaACCCAGCCuCUCuGGGc -3'
miRNA:   3'- caGGUUCGUGg------------UGGGUCGG-GAGcUCU- -5'
33354 5' -58.6 NC_007605.1 + 140601 0.67 0.782909
Target:  5'- uGUCCcuuuGGguCUcaggACCCAGCCCUgGAGc -3'
miRNA:   3'- -CAGGu---UCguGG----UGGGUCGGGAgCUCu -5'
33354 5' -58.6 NC_007605.1 + 136006 0.67 0.736136
Target:  5'- -gCCAGGCGugcagagccuCCACCUugGGUUCUCGAGGg -3'
miRNA:   3'- caGGUUCGU----------GGUGGG--UCGGGAGCUCU- -5'
33354 5' -58.6 NC_007605.1 + 135781 0.71 0.51819
Target:  5'- aGUC--AGCGCCuGCCCcuCCCUCGAGAa -3'
miRNA:   3'- -CAGguUCGUGG-UGGGucGGGAGCUCU- -5'
33354 5' -58.6 NC_007605.1 + 133663 0.69 0.627061
Target:  5'- -gUCAGGCACCugCCAGaCCUCcAGGc -3'
miRNA:   3'- caGGUUCGUGGugGGUCgGGAGcUCU- -5'
33354 5' -58.6 NC_007605.1 + 133179 0.66 0.800764
Target:  5'- -cCCGgagAGCGCCAUCCuGCCagCGGGAg -3'
miRNA:   3'- caGGU---UCGUGGUGGGuCGGgaGCUCU- -5'
33354 5' -58.6 NC_007605.1 + 133034 0.66 0.826423
Target:  5'- uUCCAGGCccugACUGCCCAGCa--CGGGGg -3'
miRNA:   3'- cAGGUUCG----UGGUGGGUCGggaGCUCU- -5'
33354 5' -58.6 NC_007605.1 + 129564 0.66 0.791906
Target:  5'- -gCCAAGCGCUccaGCCCGuaggauugcauGCCCUUGAc- -3'
miRNA:   3'- caGGUUCGUGG---UGGGU-----------CGGGAGCUcu -5'
33354 5' -58.6 NC_007605.1 + 129444 0.66 0.809475
Target:  5'- uGUCCAc-CGCCcuguGCUCGGCCCUaGAGAu -3'
miRNA:   3'- -CAGGUucGUGG----UGGGUCGGGAgCUCU- -5'
33354 5' -58.6 NC_007605.1 + 126082 0.66 0.826423
Target:  5'- -gUCGGGC-CCggACCCGGCCCg-GAGAc -3'
miRNA:   3'- caGGUUCGuGG--UGGGUCGGGagCUCU- -5'
33354 5' -58.6 NC_007605.1 + 125304 0.72 0.471085
Target:  5'- aGUCCGGGCACCGuCCCuGGCCCccuUgGAGu -3'
miRNA:   3'- -CAGGUUCGUGGU-GGG-UCGGG---AgCUCu -5'
33354 5' -58.6 NC_007605.1 + 117745 0.69 0.637116
Target:  5'- cUCCAA-CACCAUCCAGCUCUCu--- -3'
miRNA:   3'- cAGGUUcGUGGUGGGUCGGGAGcucu -5'
33354 5' -58.6 NC_007605.1 + 115469 1.08 0.001936
Target:  5'- uGUCCAAGCACCACCCAGCCCUCGAGAa -3'
miRNA:   3'- -CAGGUUCGUGGUGGGUCGGGAGCUCU- -5'
33354 5' -58.6 NC_007605.1 + 115240 0.67 0.772862
Target:  5'- -cCCAccGGCGCUGCCCcggauguugcuggGGUUCUCGAGGg -3'
miRNA:   3'- caGGU--UCGUGGUGGG-------------UCGGGAGCUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.