miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33354 5' -58.6 NC_007605.1 + 114361 0.67 0.74284
Target:  5'- aGUCCAGGgGCCACaCAGCCUgacucucauguacuUUGGGGu -3'
miRNA:   3'- -CAGGUUCgUGGUGgGUCGGG--------------AGCUCU- -5'
33354 5' -58.6 NC_007605.1 + 113970 0.75 0.308364
Target:  5'- -aCCAGGCACCACCCcGUCCcagUGGGAu -3'
miRNA:   3'- caGGUUCGUGGUGGGuCGGGa--GCUCU- -5'
33354 5' -58.6 NC_007605.1 + 104595 0.71 0.50861
Target:  5'- uUCCAgagaGGCGCaGCCCAGCCCUCc--- -3'
miRNA:   3'- cAGGU----UCGUGgUGGGUCGGGAGcucu -5'
33354 5' -58.6 NC_007605.1 + 103562 0.67 0.782909
Target:  5'- aUCCGgcaAGCACCA-UCAGCCCggGGGGa -3'
miRNA:   3'- cAGGU---UCGUGGUgGGUCGGGagCUCU- -5'
33354 5' -58.6 NC_007605.1 + 100048 0.69 0.617009
Target:  5'- aUCCAGGCAUUGCCUgaaauaGGCCCU-GAGGu -3'
miRNA:   3'- cAGGUUCGUGGUGGG------UCGGGAgCUCU- -5'
33354 5' -58.6 NC_007605.1 + 93490 0.66 0.817182
Target:  5'- aUCUAuAGcCACCAucuCCCAGCuucugcaCCUCGAGAu -3'
miRNA:   3'- cAGGU-UC-GUGGU---GGGUCG-------GGAGCUCU- -5'
33354 5' -58.6 NC_007605.1 + 88681 0.7 0.575988
Target:  5'- aUCCucuGCACCAucauggucaucucCCCAGCCC-CGAGc -3'
miRNA:   3'- cAGGuu-CGUGGU-------------GGGUCGGGaGCUCu -5'
33354 5' -58.6 NC_007605.1 + 85237 0.69 0.667229
Target:  5'- -cUCAGGUGCCGCCCguuccccggcagAGgCCUCGGGGg -3'
miRNA:   3'- caGGUUCGUGGUGGG------------UCgGGAGCUCU- -5'
33354 5' -58.6 NC_007605.1 + 85172 0.66 0.826423
Target:  5'- -aCCAccugaGGUGCCACCCguuccccggcagAGgCCUCGGGGg -3'
miRNA:   3'- caGGU-----UCGUGGUGGG------------UCgGGAGCUCU- -5'
33354 5' -58.6 NC_007605.1 + 82168 0.66 0.800764
Target:  5'- -cCCAGGUGCCGCCCugAGCCa--GAGu -3'
miRNA:   3'- caGGUUCGUGGUGGG--UCGGgagCUCu -5'
33354 5' -58.6 NC_007605.1 + 77791 0.72 0.487804
Target:  5'- -cCCAGGCACCACCagccaagcgucaGGCCCUgGAa- -3'
miRNA:   3'- caGGUUCGUGGUGGg-----------UCGGGAgCUcu -5'
33354 5' -58.6 NC_007605.1 + 75633 0.66 0.808611
Target:  5'- uUCaCAAGCACCACCucaccuccuucuaCAGCCCccacagugacgCGGGGg -3'
miRNA:   3'- cAG-GUUCGUGGUGG-------------GUCGGGa----------GCUCU- -5'
33354 5' -58.6 NC_007605.1 + 74844 0.7 0.596946
Target:  5'- gGUCCGGGCACuCAaaggucUCCGGCuCCUCaGGGAg -3'
miRNA:   3'- -CAGGUUCGUG-GU------GGGUCG-GGAG-CUCU- -5'
33354 5' -58.6 NC_007605.1 + 71570 0.68 0.697093
Target:  5'- --gCAAGCGCCGacaCCuGCCCcCGGGAg -3'
miRNA:   3'- cagGUUCGUGGUg--GGuCGGGaGCUCU- -5'
33354 5' -58.6 NC_007605.1 + 71331 0.68 0.697093
Target:  5'- cUCUAGGCACC-CUgggGGCCCUUGGGGc -3'
miRNA:   3'- cAGGUUCGUGGuGGg--UCGGGAGCUCU- -5'
33354 5' -58.6 NC_007605.1 + 71243 0.73 0.417592
Target:  5'- uUCCuuguGCuCCugCCGGCCCcUCGAGAu -3'
miRNA:   3'- cAGGuu--CGuGGugGGUCGGG-AGCUCU- -5'
33354 5' -58.6 NC_007605.1 + 69472 0.7 0.586949
Target:  5'- -gCCGAGCACCGgCCAGgCUUCcAGAg -3'
miRNA:   3'- caGGUUCGUGGUgGGUCgGGAGcUCU- -5'
33354 5' -58.6 NC_007605.1 + 68769 0.66 0.834645
Target:  5'- cGUgCAAGCAgCACCUGuCCCUgGGGGc -3'
miRNA:   3'- -CAgGUUCGUgGUGGGUcGGGAgCUCU- -5'
33354 5' -58.6 NC_007605.1 + 65213 0.69 0.617009
Target:  5'- -aCCuguGCGCCgagguGCUgCAGCCCUCGAGGa -3'
miRNA:   3'- caGGuu-CGUGG-----UGG-GUCGGGAGCUCU- -5'
33354 5' -58.6 NC_007605.1 + 62140 0.67 0.739015
Target:  5'- cGUCCuGGCcuuugacGCCGCCCggcuccggcuuuuggAGCCCUCaGGGGc -3'
miRNA:   3'- -CAGGuUCG-------UGGUGGG---------------UCGGGAG-CUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.