miRNA display CGI


Results 41 - 60 of 69 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33354 5' -58.6 NC_007605.1 + 61121 0.67 0.773782
Target:  5'- aUCCGcgcGCGCCGuuuggCCGGCCCUCaGGGAc -3'
miRNA:   3'- cAGGUu--CGUGGUg----GGUCGGGAG-CUCU- -5'
33354 5' -58.6 NC_007605.1 + 60508 0.67 0.7636
Target:  5'- cUCCAAGCugCcCCCGucaagcgcgagauGUCCUcCGAGAg -3'
miRNA:   3'- cAGGUUCGugGuGGGU-------------CGGGA-GCUCU- -5'
33354 5' -58.6 NC_007605.1 + 60141 0.69 0.647168
Target:  5'- cUCCAgGGCGugcuCCACCCgcucguugAGCuCCUCGAGAu -3'
miRNA:   3'- cAGGU-UCGU----GGUGGG--------UCG-GGAGCUCU- -5'
33354 5' -58.6 NC_007605.1 + 59071 0.66 0.818031
Target:  5'- -gCCGAGCcuCCACuCCcGCCCcCGGGGg -3'
miRNA:   3'- caGGUUCGu-GGUG-GGuCGGGaGCUCU- -5'
33354 5' -58.6 NC_007605.1 + 54372 0.66 0.800764
Target:  5'- -cCCAGGCaACCGCCCcGCCCaggcuggccUCGGa- -3'
miRNA:   3'- caGGUUCG-UGGUGGGuCGGG---------AGCUcu -5'
33354 5' -58.6 NC_007605.1 + 54203 0.66 0.818031
Target:  5'- gGUCCGGGagaGCCagACCCugauggcgaaGGCCCaCGAGAu -3'
miRNA:   3'- -CAGGUUCg--UGG--UGGG----------UCGGGaGCUCU- -5'
33354 5' -58.6 NC_007605.1 + 54045 0.72 0.499104
Target:  5'- uGUCCAGGCuccccucgagGCCGCCCuGGCCCgggcagcggcCGGGAa -3'
miRNA:   3'- -CAGGUUCG----------UGGUGGG-UCGGGa---------GCUCU- -5'
33354 5' -58.6 NC_007605.1 + 52264 0.67 0.754226
Target:  5'- uUCCuacGGCACCguuaccgGCCgGGCCCU-GAGAa -3'
miRNA:   3'- cAGGu--UCGUGG-------UGGgUCGGGAgCUCU- -5'
33354 5' -58.6 NC_007605.1 + 49966 0.67 0.782909
Target:  5'- uUCCAccCACCGCCucaucgCAGaCCUCGAGAg -3'
miRNA:   3'- cAGGUucGUGGUGG------GUCgGGAGCUCU- -5'
33354 5' -58.6 NC_007605.1 + 47059 0.66 0.818031
Target:  5'- -cCCAGGCaaggGCCGCuCUGGCCCgaucUGAGAc -3'
miRNA:   3'- caGGUUCG----UGGUG-GGUCGGGa---GCUCU- -5'
33354 5' -58.6 NC_007605.1 + 45088 0.66 0.826423
Target:  5'- cGUCCGGGUggGCC-CCgaGGCUCUCGcAGAg -3'
miRNA:   3'- -CAGGUUCG--UGGuGGg-UCGGGAGC-UCU- -5'
33354 5' -58.6 NC_007605.1 + 40793 0.68 0.68718
Target:  5'- cUCCAGGUACCACCCA--CCUgGuGAc -3'
miRNA:   3'- cAGGUUCGUGGUGGGUcgGGAgCuCU- -5'
33354 5' -58.6 NC_007605.1 + 33825 0.66 0.800764
Target:  5'- -cCCGAGguCCcagcACCCGGuCCCUcCGGGGg -3'
miRNA:   3'- caGGUUCguGG----UGGGUC-GGGA-GCUCU- -5'
33354 5' -58.6 NC_007605.1 + 33115 0.69 0.647168
Target:  5'- cUCCuaagaAGGCACCggucGCCCAGUCCUaccaGAGGg -3'
miRNA:   3'- cAGG-----UUCGUGG----UGGGUCGGGAg---CUCU- -5'
33354 5' -58.6 NC_007605.1 + 30756 0.66 0.800764
Target:  5'- -cCCGAGguCCcagcACCCGGuCCCUcCGGGGg -3'
miRNA:   3'- caGGUUCguGG----UGGGUC-GGGA-GCUCU- -5'
33354 5' -58.6 NC_007605.1 + 30046 0.69 0.647168
Target:  5'- cUCCuaagaAGGCACCggucGCCCAGUCCUaccaGAGGg -3'
miRNA:   3'- cAGG-----UUCGUGG----UGGGUCGGGAg---CUCU- -5'
33354 5' -58.6 NC_007605.1 + 27687 0.66 0.800764
Target:  5'- -cCCGAGguCCcagcACCCGGuCCCUcCGGGGg -3'
miRNA:   3'- caGGUUCguGG----UGGGUC-GGGA-GCUCU- -5'
33354 5' -58.6 NC_007605.1 + 26977 0.69 0.647168
Target:  5'- cUCCuaagaAGGCACCggucGCCCAGUCCUaccaGAGGg -3'
miRNA:   3'- cAGG-----UUCGUGG----UGGGUCGGGAg---CUCU- -5'
33354 5' -58.6 NC_007605.1 + 24618 0.66 0.800764
Target:  5'- -cCCGAGguCCcagcACCCGGuCCCUcCGGGGg -3'
miRNA:   3'- caGGUUCguGG----UGGGUC-GGGA-GCUCU- -5'
33354 5' -58.6 NC_007605.1 + 23909 0.69 0.647168
Target:  5'- cUCCuaagaAGGCACCggucGCCCAGUCCUaccaGAGGg -3'
miRNA:   3'- cAGG-----UUCGUGG----UGGGUCGGGAg---CUCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.