miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33354 5' -58.6 NC_007605.1 + 85237 0.69 0.667229
Target:  5'- -cUCAGGUGCCGCCCguuccccggcagAGgCCUCGGGGg -3'
miRNA:   3'- caGGUUCGUGGUGGG------------UCgGGAGCUCU- -5'
33354 5' -58.6 NC_007605.1 + 14702 0.69 0.647168
Target:  5'- cUCCuaagaAGGCACCggucGCCCAGUCCUaccaGAGGg -3'
miRNA:   3'- cAGG-----UUCGUGG----UGGGUCGGGAg---CUCU- -5'
33354 5' -58.6 NC_007605.1 + 17771 0.69 0.647168
Target:  5'- cUCCuaagaAGGCACCggucGCCCAGUCCUaccaGAGGg -3'
miRNA:   3'- cAGG-----UUCGUGG----UGGGUCGGGAg---CUCU- -5'
33354 5' -58.6 NC_007605.1 + 20840 0.69 0.647168
Target:  5'- cUCCuaagaAGGCACCggucGCCCAGUCCUaccaGAGGg -3'
miRNA:   3'- cAGG-----UUCGUGG----UGGGUCGGGAg---CUCU- -5'
33354 5' -58.6 NC_007605.1 + 23909 0.69 0.647168
Target:  5'- cUCCuaagaAGGCACCggucGCCCAGUCCUaccaGAGGg -3'
miRNA:   3'- cAGG-----UUCGUGG----UGGGUCGGGAg---CUCU- -5'
33354 5' -58.6 NC_007605.1 + 26977 0.69 0.647168
Target:  5'- cUCCuaagaAGGCACCggucGCCCAGUCCUaccaGAGGg -3'
miRNA:   3'- cAGG-----UUCGUGG----UGGGUCGGGAg---CUCU- -5'
33354 5' -58.6 NC_007605.1 + 30046 0.69 0.647168
Target:  5'- cUCCuaagaAGGCACCggucGCCCAGUCCUaccaGAGGg -3'
miRNA:   3'- cAGG-----UUCGUGG----UGGGUCGGGAg---CUCU- -5'
33354 5' -58.6 NC_007605.1 + 33115 0.69 0.647168
Target:  5'- cUCCuaagaAGGCACCggucGCCCAGUCCUaccaGAGGg -3'
miRNA:   3'- cAGG-----UUCGUGG----UGGGUCGGGAg---CUCU- -5'
33354 5' -58.6 NC_007605.1 + 60141 0.69 0.647168
Target:  5'- cUCCAgGGCGugcuCCACCCgcucguugAGCuCCUCGAGAu -3'
miRNA:   3'- cAGGU-UCGU----GGUGGG--------UCG-GGAGCUCU- -5'
33354 5' -58.6 NC_007605.1 + 117745 0.69 0.637116
Target:  5'- cUCCAA-CACCAUCCAGCUCUCu--- -3'
miRNA:   3'- cAGGUUcGUGGUGGGUCGGGAGcucu -5'
33354 5' -58.6 NC_007605.1 + 133663 0.69 0.627061
Target:  5'- -gUCAGGCACCugCCAGaCCUCcAGGc -3'
miRNA:   3'- caGGUUCGUGGugGGUCgGGAGcUCU- -5'
33354 5' -58.6 NC_007605.1 + 5733 0.69 0.627061
Target:  5'- uGUCCcccuAGCcCCggGCCCAGCCCUCcucAGAa -3'
miRNA:   3'- -CAGGu---UCGuGG--UGGGUCGGGAGc--UCU- -5'
33354 5' -58.6 NC_007605.1 + 113970 0.75 0.308364
Target:  5'- -aCCAGGCACCACCCcGUCCcagUGGGAu -3'
miRNA:   3'- caGGUUCGUGGUGGGuCGGGa--GCUCU- -5'
33354 5' -58.6 NC_007605.1 + 71243 0.73 0.417592
Target:  5'- uUCCuuguGCuCCugCCGGCCCcUCGAGAu -3'
miRNA:   3'- cAGGuu--CGuGGugGGUCGGG-AGCUCU- -5'
33354 5' -58.6 NC_007605.1 + 125304 0.72 0.471085
Target:  5'- aGUCCGGGCACCGuCCCuGGCCCccuUgGAGu -3'
miRNA:   3'- -CAGGUUCGUGGU-GGG-UCGGG---AgCUCu -5'
33354 5' -58.6 NC_007605.1 + 104595 0.71 0.50861
Target:  5'- uUCCAgagaGGCGCaGCCCAGCCCUCc--- -3'
miRNA:   3'- cAGGU----UCGUGgUGGGUCGGGAGcucu -5'
33354 5' -58.6 NC_007605.1 + 135781 0.71 0.51819
Target:  5'- aGUC--AGCGCCuGCCCcuCCCUCGAGAa -3'
miRNA:   3'- -CAGguUCGUGG-UGGGucGGGAGCUCU- -5'
33354 5' -58.6 NC_007605.1 + 88681 0.7 0.575988
Target:  5'- aUCCucuGCACCAucauggucaucucCCCAGCCC-CGAGc -3'
miRNA:   3'- cAGGuu-CGUGGU-------------GGGUCGGGaGCUCu -5'
33354 5' -58.6 NC_007605.1 + 65213 0.69 0.617009
Target:  5'- -aCCuguGCGCCgagguGCUgCAGCCCUCGAGGa -3'
miRNA:   3'- caGGuu-CGUGG-----UGG-GUCGGGAGCUCU- -5'
33354 5' -58.6 NC_007605.1 + 100048 0.69 0.617009
Target:  5'- aUCCAGGCAUUGCCUgaaauaGGCCCU-GAGGu -3'
miRNA:   3'- cAGGUUCGUGGUGGG------UCGGGAgCUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.