Results 61 - 69 of 69 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33354 | 5' | -58.6 | NC_007605.1 | + | 54045 | 0.72 | 0.499104 |
Target: 5'- uGUCCAGGCuccccucgagGCCGCCCuGGCCCgggcagcggcCGGGAa -3' miRNA: 3'- -CAGGUUCG----------UGGUGGG-UCGGGa---------GCUCU- -5' |
|||||||
33354 | 5' | -58.6 | NC_007605.1 | + | 69472 | 0.7 | 0.586949 |
Target: 5'- -gCCGAGCACCGgCCAGgCUUCcAGAg -3' miRNA: 3'- caGGUUCGUGGUgGGUCgGGAGcUCU- -5' |
|||||||
33354 | 5' | -58.6 | NC_007605.1 | + | 74844 | 0.7 | 0.596946 |
Target: 5'- gGUCCGGGCACuCAaaggucUCCGGCuCCUCaGGGAg -3' miRNA: 3'- -CAGGUUCGUG-GU------GGGUCG-GGAG-CUCU- -5' |
|||||||
33354 | 5' | -58.6 | NC_007605.1 | + | 168992 | 0.69 | 0.667229 |
Target: 5'- -aCCGGGC-CCGCgaCGGCCCccUCGAGGa -3' miRNA: 3'- caGGUUCGuGGUGg-GUCGGG--AGCUCU- -5' |
|||||||
33354 | 5' | -58.6 | NC_007605.1 | + | 157654 | 0.68 | 0.68718 |
Target: 5'- aGUCCAucgcccccAGCcCCAUCCgcGGCCCgCGGGAg -3' miRNA: 3'- -CAGGU--------UCGuGGUGGG--UCGGGaGCUCU- -5' |
|||||||
33354 | 5' | -58.6 | NC_007605.1 | + | 40793 | 0.68 | 0.68718 |
Target: 5'- cUCCAGGUACCACCCA--CCUgGuGAc -3' miRNA: 3'- cAGGUUCGUGGUGGGUcgGGAgCuCU- -5' |
|||||||
33354 | 5' | -58.6 | NC_007605.1 | + | 71570 | 0.68 | 0.697093 |
Target: 5'- --gCAAGCGCCGacaCCuGCCCcCGGGAg -3' miRNA: 3'- cagGUUCGUGGUg--GGuCGGGaGCUCU- -5' |
|||||||
33354 | 5' | -58.6 | NC_007605.1 | + | 136006 | 0.67 | 0.736136 |
Target: 5'- -gCCAGGCGugcagagccuCCACCUugGGUUCUCGAGGg -3' miRNA: 3'- caGGUUCGU----------GGUGGG--UCGGGAGCUCU- -5' |
|||||||
33354 | 5' | -58.6 | NC_007605.1 | + | 115469 | 1.08 | 0.001936 |
Target: 5'- uGUCCAAGCACCACCCAGCCCUCGAGAa -3' miRNA: 3'- -CAGGUUCGUGGUGGGUCGGGAGCUCU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home