miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33355 3' -59.1 NC_007605.1 + 22391 0.66 0.790316
Target:  5'- ---cUCCGGCUGGC-CUGGGaCCCg- -3'
miRNA:   3'- guaaAGGUCGGCCGcGACUCcGGGac -5'
33355 3' -59.1 NC_007605.1 + 16253 0.66 0.790316
Target:  5'- ---cUCCGGCUGGC-CUGGGaCCCg- -3'
miRNA:   3'- guaaAGGUCGGCCGcGACUCcGGGac -5'
33355 3' -59.1 NC_007605.1 + 34667 0.66 0.790316
Target:  5'- ---cUCCGGCUGGC-CUGGGaCCCg- -3'
miRNA:   3'- guaaAGGUCGGCCGcGACUCcGGGac -5'
33355 3' -59.1 NC_007605.1 + 25460 0.66 0.790316
Target:  5'- ---cUCCGGCUGGC-CUGGGaCCCg- -3'
miRNA:   3'- guaaAGGUCGGCCGcGACUCcGGGac -5'
33355 3' -59.1 NC_007605.1 + 28529 0.66 0.790316
Target:  5'- ---cUCCGGCUGGC-CUGGGaCCCg- -3'
miRNA:   3'- guaaAGGUCGGCCGcGACUCcGGGac -5'
33355 3' -59.1 NC_007605.1 + 31598 0.66 0.790316
Target:  5'- ---cUCCGGCUGGC-CUGGGaCCCg- -3'
miRNA:   3'- guaaAGGUCGGCCGcGACUCcGGGac -5'
33355 3' -59.1 NC_007605.1 + 19322 0.66 0.790316
Target:  5'- ---cUCCGGCUGGC-CUGGGaCCCg- -3'
miRNA:   3'- guaaAGGUCGGCCGcGACUCcGGGac -5'
33355 3' -59.1 NC_007605.1 + 13184 0.66 0.790316
Target:  5'- ---cUCCGGCUGGC-CUGGGaCCCg- -3'
miRNA:   3'- guaaAGGUCGGCCGcGACUCcGGGac -5'
33355 3' -59.1 NC_007605.1 + 64666 0.66 0.781288
Target:  5'- ---cUCCGGCCuGGCccGCUGcAGggcuGCCCUGa -3'
miRNA:   3'- guaaAGGUCGG-CCG--CGAC-UC----CGGGAC- -5'
33355 3' -59.1 NC_007605.1 + 154997 0.66 0.772132
Target:  5'- --gUUgUAGCCGGUcacaaucuccacGCUGAGGUCuCUGa -3'
miRNA:   3'- guaAAgGUCGGCCG------------CGACUCCGG-GAC- -5'
33355 3' -59.1 NC_007605.1 + 33912 0.66 0.762854
Target:  5'- ----gCCGGUCGGCuggGCUGGccGGCCCg- -3'
miRNA:   3'- guaaaGGUCGGCCG---CGACU--CCGGGac -5'
33355 3' -59.1 NC_007605.1 + 106658 0.67 0.743972
Target:  5'- ----gCCAGCCGcCGCUugGAGGCucCCUGg -3'
miRNA:   3'- guaaaGGUCGGCcGCGA--CUCCG--GGAC- -5'
33355 3' -59.1 NC_007605.1 + 45414 0.67 0.734384
Target:  5'- ----aUgAGCUGGCGgaGuuGGCCCUGg -3'
miRNA:   3'- guaaaGgUCGGCCGCgaCu-CCGGGAC- -5'
33355 3' -59.1 NC_007605.1 + 4402 0.67 0.734384
Target:  5'- ----aCCuGCCuGGUGgaGAuGGCCCUGg -3'
miRNA:   3'- guaaaGGuCGG-CCGCgaCU-CCGGGAC- -5'
33355 3' -59.1 NC_007605.1 + 62870 0.67 0.724711
Target:  5'- ----cCCAGCCGGUGCUGGuGCgCg- -3'
miRNA:   3'- guaaaGGUCGGCCGCGACUcCGgGac -5'
33355 3' -59.1 NC_007605.1 + 151606 0.67 0.724711
Target:  5'- ---cUCCGGCugcccgucuCGGC-CUacGAGGCCCUGg -3'
miRNA:   3'- guaaAGGUCG---------GCCGcGA--CUCCGGGAC- -5'
33355 3' -59.1 NC_007605.1 + 74461 0.67 0.71496
Target:  5'- ----aCCuGCCGGCGgagGAGGCCUUc -3'
miRNA:   3'- guaaaGGuCGGCCGCga-CUCCGGGAc -5'
33355 3' -59.1 NC_007605.1 + 52204 0.67 0.705142
Target:  5'- ---cUCCAGCgGGCGCaaUGAGuGCCa-- -3'
miRNA:   3'- guaaAGGUCGgCCGCG--ACUC-CGGgac -5'
33355 3' -59.1 NC_007605.1 + 3899 0.67 0.705142
Target:  5'- ----aCCAgGCUGGCaaugGCUGAGGCgCUGc -3'
miRNA:   3'- guaaaGGU-CGGCCG----CGACUCCGgGAC- -5'
33355 3' -59.1 NC_007605.1 + 39961 0.67 0.705142
Target:  5'- gAUUgCCGGCUgGGgGCUGGGGUCCc- -3'
miRNA:   3'- gUAAaGGUCGG-CCgCGACUCCGGGac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.