miRNA display CGI


Results 1 - 20 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33361 3' -66.1 NC_007605.1 + 170838 0.66 0.537735
Target:  5'- cCGCaGcCCCCGGgCCCGCG-GACc-- -3'
miRNA:   3'- uGCGcC-GGGGCCgGGGCGCuCUGucc -5'
33361 3' -66.1 NC_007605.1 + 157442 0.66 0.537735
Target:  5'- uGCGCGGgCCUGGUgCCUGgagcagaaGAGGCAGa -3'
miRNA:   3'- -UGCGCCgGGGCCG-GGGCg-------CUCUGUCc -5'
33361 3' -66.1 NC_007605.1 + 50577 0.66 0.537735
Target:  5'- gGCGCuGGCggCCGGCgCCCGUccucgGGGGCAGc -3'
miRNA:   3'- -UGCG-CCGg-GGCCG-GGGCG-----CUCUGUCc -5'
33361 3' -66.1 NC_007605.1 + 81491 0.66 0.536822
Target:  5'- --cCGGCCCUGGgagccauCCCUgacacaggcuGCGGGGCAGGc -3'
miRNA:   3'- ugcGCCGGGGCC-------GGGG----------CGCUCUGUCC- -5'
33361 3' -66.1 NC_007605.1 + 10573 0.66 0.528634
Target:  5'- cCG-GGCCCaGGCCuuGCaGGGCAGa -3'
miRNA:   3'- uGCgCCGGGgCCGGggCGcUCUGUCc -5'
33361 3' -66.1 NC_007605.1 + 50664 0.66 0.528634
Target:  5'- uCGCaGCCCgaCGGCCgUgGgGAGGCGGGu -3'
miRNA:   3'- uGCGcCGGG--GCCGG-GgCgCUCUGUCC- -5'
33361 3' -66.1 NC_007605.1 + 102645 0.66 0.519591
Target:  5'- aACaCGGCCCCucucaaGGCCaUCGUGGGccACGGGg -3'
miRNA:   3'- -UGcGCCGGGG------CCGG-GGCGCUC--UGUCC- -5'
33361 3' -66.1 NC_007605.1 + 155333 0.66 0.519591
Target:  5'- gGCGUacGaGUCCCGGUgCUG-GAGGCGGGg -3'
miRNA:   3'- -UGCG--C-CGGGGCCGgGGCgCUCUGUCC- -5'
33361 3' -66.1 NC_007605.1 + 133962 0.66 0.51869
Target:  5'- cCG-GGCCCa-GCuccagcagcucuuCCCGUGAGGCAGGg -3'
miRNA:   3'- uGCgCCGGGgcCG-------------GGGCGCUCUGUCC- -5'
33361 3' -66.1 NC_007605.1 + 62524 0.66 0.51689
Target:  5'- -gGUGGCCgacacuuaucuggcCCGGUgggacgccuuCCCGCGGGAgGGGc -3'
miRNA:   3'- ugCGCCGG--------------GGCCG----------GGGCGCUCUgUCC- -5'
33361 3' -66.1 NC_007605.1 + 171397 0.66 0.514194
Target:  5'- uCGCGcCCCCGGCCgCGCcagccaagcccccaaGGGggGCGGGg -3'
miRNA:   3'- uGCGCcGGGGCCGGgGCG---------------CUC--UGUCC- -5'
33361 3' -66.1 NC_007605.1 + 170859 0.66 0.514194
Target:  5'- uCGCGcCCCCGGCCgCGCcagccaagcccccaaGGGggGCGGGg -3'
miRNA:   3'- uGCGCcGGGGCCGGgGCG---------------CUC--UGUCC- -5'
33361 3' -66.1 NC_007605.1 + 169799 0.66 0.514194
Target:  5'- uCGCGcCCCCGGCCgCGCcagccaagcccccaaGGGggGCGGGg -3'
miRNA:   3'- uGCGCcGGGGCCGGgGCG---------------CUC--UGUCC- -5'
33361 3' -66.1 NC_007605.1 + 170337 0.66 0.514194
Target:  5'- uCGCGcCCCCGGCCgCGCcagccaagcccccaaGGGggGCGGGg -3'
miRNA:   3'- uGCGCcGGGGCCGGgGCG---------------CUC--UGUCC- -5'
33361 3' -66.1 NC_007605.1 + 61452 0.66 0.51061
Target:  5'- -gGCaGGCCCCGGCCCCgGCuccGGCc-- -3'
miRNA:   3'- ugCG-CCGGGGCCGGGG-CGcu-CUGucc -5'
33361 3' -66.1 NC_007605.1 + 58238 0.66 0.51061
Target:  5'- cCGCGGCCCCGGCCuCCaGCc------- -3'
miRNA:   3'- uGCGCCGGGGCCGG-GG-CGcucugucc -5'
33361 3' -66.1 NC_007605.1 + 64645 0.66 0.51061
Target:  5'- -gGCuGCCCUGaGaCCCGCGuagAGGCAGGu -3'
miRNA:   3'- ugCGcCGGGGC-CgGGGCGC---UCUGUCC- -5'
33361 3' -66.1 NC_007605.1 + 47067 0.66 0.51061
Target:  5'- cCGCcaacGCCCagaaGGCCUCGCGGGuCAuGGa -3'
miRNA:   3'- uGCGc---CGGGg---CCGGGGCGCUCuGU-CC- -5'
33361 3' -66.1 NC_007605.1 + 18889 0.66 0.501693
Target:  5'- gAC-CGGCCCCGcGCCUgGCGccuccuCGGGg -3'
miRNA:   3'- -UGcGCCGGGGC-CGGGgCGCucu---GUCC- -5'
33361 3' -66.1 NC_007605.1 + 15820 0.66 0.501693
Target:  5'- gAC-CGGCCCCGcGCCUgGCGccuccuCGGGg -3'
miRNA:   3'- -UGcGCCGGGGC-CGGGgCGCucu---GUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.