miRNA display CGI


Results 21 - 40 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33361 3' -66.1 NC_007605.1 + 60439 0.66 0.501693
Target:  5'- gGCGCcuccuGGUgCCGGCCCUcaGgGAGAgcCGGGg -3'
miRNA:   3'- -UGCG-----CCGgGGCCGGGG--CgCUCU--GUCC- -5'
33361 3' -66.1 NC_007605.1 + 165964 0.66 0.492846
Target:  5'- gGCGCGGguCCCCcuaGCCCCgGCGGGGauccGGa -3'
miRNA:   3'- -UGCGCC--GGGGc--CGGGG-CGCUCUgu--CC- -5'
33361 3' -66.1 NC_007605.1 + 64645 0.66 0.51061
Target:  5'- -gGCuGCCCUGaGaCCCGCGuagAGGCAGGu -3'
miRNA:   3'- ugCGcCGGGGC-CgGGGCGC---UCUGUCC- -5'
33361 3' -66.1 NC_007605.1 + 154144 0.66 0.492846
Target:  5'- uCGUggaGGCCCUGaGCCCCGCcaaccuGCAGGc -3'
miRNA:   3'- uGCG---CCGGGGC-CGGGGCGcuc---UGUCC- -5'
33361 3' -66.1 NC_007605.1 + 81491 0.66 0.536822
Target:  5'- --cCGGCCCUGGgagccauCCCUgacacaggcuGCGGGGCAGGc -3'
miRNA:   3'- ugcGCCGGGGCC-------GGGG----------CGCUCUGUCC- -5'
33361 3' -66.1 NC_007605.1 + 18889 0.66 0.501693
Target:  5'- gAC-CGGCCCCGcGCCUgGCGccuccuCGGGg -3'
miRNA:   3'- -UGcGCCGGGGC-CGGGgCGCucu---GUCC- -5'
33361 3' -66.1 NC_007605.1 + 47067 0.66 0.51061
Target:  5'- cCGCcaacGCCCagaaGGCCUCGCGGGuCAuGGa -3'
miRNA:   3'- uGCGc---CGGGg---CCGGGGCGCUCuGU-CC- -5'
33361 3' -66.1 NC_007605.1 + 170838 0.66 0.537735
Target:  5'- cCGCaGcCCCCGGgCCCGCG-GACc-- -3'
miRNA:   3'- uGCGcC-GGGGCCgGGGCGCuCUGucc -5'
33361 3' -66.1 NC_007605.1 + 61452 0.66 0.51061
Target:  5'- -gGCaGGCCCCGGCCCCgGCuccGGCc-- -3'
miRNA:   3'- ugCG-CCGGGGCCGGGG-CGcu-CUGucc -5'
33361 3' -66.1 NC_007605.1 + 15820 0.66 0.501693
Target:  5'- gAC-CGGCCCCGcGCCUgGCGccuccuCGGGg -3'
miRNA:   3'- -UGcGCCGGGGC-CGGGgCGCucu---GUCC- -5'
33361 3' -66.1 NC_007605.1 + 157442 0.66 0.537735
Target:  5'- uGCGCGGgCCUGGUgCCUGgagcagaaGAGGCAGa -3'
miRNA:   3'- -UGCGCCgGGGCCG-GGGCg-------CUCUGUCc -5'
33361 3' -66.1 NC_007605.1 + 23779 0.67 0.449757
Target:  5'- aACcCGGCCCgGGCCCCcCGGuauCGGGc -3'
miRNA:   3'- -UGcGCCGGGgCCGGGGcGCUcu-GUCC- -5'
33361 3' -66.1 NC_007605.1 + 14572 0.67 0.449757
Target:  5'- aACcCGGCCCgGGCCCCcCGGuauCGGGc -3'
miRNA:   3'- -UGcGCCGGGgCCGGGGcGCUcu-GUCC- -5'
33361 3' -66.1 NC_007605.1 + 59316 0.67 0.433109
Target:  5'- cCGgGGaaCCGGCCCCGUGcgcGGAauCAGGa -3'
miRNA:   3'- uGCgCCggGGCCGGGGCGC---UCU--GUCC- -5'
33361 3' -66.1 NC_007605.1 + 54629 0.67 0.458212
Target:  5'- -gGCGGCCgaugccauccguUCGGCCCuCGCGcAGACGc- -3'
miRNA:   3'- ugCGCCGG------------GGCCGGG-GCGC-UCUGUcc -5'
33361 3' -66.1 NC_007605.1 + 159024 0.67 0.449757
Target:  5'- gACGCGgucaGCCCCggccaGGCCCUGCccccGGAUGGGc -3'
miRNA:   3'- -UGCGC----CGGGG-----CCGGGGCGc---UCUGUCC- -5'
33361 3' -66.1 NC_007605.1 + 101046 0.67 0.441389
Target:  5'- -gGCGGCCauaaUGGaCCCCGCGcaguacguGGGCuGGa -3'
miRNA:   3'- ugCGCCGGg---GCC-GGGGCGC--------UCUGuCC- -5'
33361 3' -66.1 NC_007605.1 + 29917 0.67 0.441389
Target:  5'- aACcCGGCCCgGGCCCCcCGGuAUGGGc -3'
miRNA:   3'- -UGcGCCGGGgCCGGGGcGCUcUGUCC- -5'
33361 3' -66.1 NC_007605.1 + 49805 0.67 0.441389
Target:  5'- uUGCGGCgaagCUGGCUCacgaaGCGAGACAGu -3'
miRNA:   3'- uGCGCCGg---GGCCGGGg----CGCUCUGUCc -5'
33361 3' -66.1 NC_007605.1 + 17641 0.67 0.449757
Target:  5'- aACcCGGCCCgGGCCCCcCGGuauCGGGc -3'
miRNA:   3'- -UGcGCCGGGgCCGGGGcGCUcu-GUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.