miRNA display CGI


Results 41 - 60 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33361 3' -66.1 NC_007605.1 + 99755 0.67 0.448916
Target:  5'- gGCGCuGUCCCGGgCCCggcacucuaauuGCGuggucauGGACAGGa -3'
miRNA:   3'- -UGCGcCGGGGCCgGGG------------CGC-------UCUGUCC- -5'
33361 3' -66.1 NC_007605.1 + 54629 0.67 0.458212
Target:  5'- -gGCGGCCgaugccauccguUCGGCCCuCGCGcAGACGc- -3'
miRNA:   3'- ugCGCCGG------------GGCCGGG-GCGC-UCUGUcc -5'
33361 3' -66.1 NC_007605.1 + 159024 0.67 0.449757
Target:  5'- gACGCGgucaGCCCCggccaGGCCCUGCccccGGAUGGGc -3'
miRNA:   3'- -UGCGC----CGGGG-----CCGGGGCGc---UCUGUCC- -5'
33361 3' -66.1 NC_007605.1 + 21954 0.67 0.475372
Target:  5'- aGCGacCGGCCCCGcGCCUgGCGccuccuCGGGg -3'
miRNA:   3'- -UGC--GCCGGGGC-CGGGgCGCucu---GUCC- -5'
33361 3' -66.1 NC_007605.1 + 23779 0.67 0.449757
Target:  5'- aACcCGGCCCgGGCCCCcCGGuauCGGGc -3'
miRNA:   3'- -UGcGCCGGGgCCGGGGcGCUcu-GUCC- -5'
33361 3' -66.1 NC_007605.1 + 14572 0.67 0.449757
Target:  5'- aACcCGGCCCgGGCCCCcCGGuauCGGGc -3'
miRNA:   3'- -UGcGCCGGGgCCGGGGcGCUcu-GUCC- -5'
33361 3' -66.1 NC_007605.1 + 115467 0.67 0.433109
Target:  5'- cCGCGGCCaCCGGCauaugcucuauaCCCGCcccuccggGGGGCccAGGa -3'
miRNA:   3'- uGCGCCGG-GGCCG------------GGGCG--------CUCUG--UCC- -5'
33361 3' -66.1 NC_007605.1 + 59316 0.67 0.433109
Target:  5'- cCGgGGaaCCGGCCCCGUGcgcGGAauCAGGa -3'
miRNA:   3'- uGCgCCggGGCCGGGGCGC---UCU--GUCC- -5'
33361 3' -66.1 NC_007605.1 + 162039 0.67 0.487572
Target:  5'- cCGcCGGCcguacaCCCGGCCCUGCaGGGccgcguccaggucugGCAGGu -3'
miRNA:   3'- uGC-GCCG------GGGCCGGGGCG-CUC---------------UGUCC- -5'
33361 3' -66.1 NC_007605.1 + 50356 0.67 0.458212
Target:  5'- gGCGgGGCCgCGGugggcugcCCCCGa-GGACGGGc -3'
miRNA:   3'- -UGCgCCGGgGCC--------GGGGCgcUCUGUCC- -5'
33361 3' -66.1 NC_007605.1 + 29917 0.67 0.441389
Target:  5'- aACcCGGCCCgGGCCCCcCGGuAUGGGc -3'
miRNA:   3'- -UGcGCCGGGgCCGGGGcGCUcUGUCC- -5'
33361 3' -66.1 NC_007605.1 + 49805 0.67 0.441389
Target:  5'- uUGCGGCgaagCUGGCUCacgaaGCGAGACAGu -3'
miRNA:   3'- uGCGCCGg---GGCCGGGg----CGCUCUGUCc -5'
33361 3' -66.1 NC_007605.1 + 162766 0.67 0.475372
Target:  5'- cCGgGG-CCCGGCCCUcgcagaGCGAGcACAuGGg -3'
miRNA:   3'- uGCgCCgGGGCCGGGG------CGCUC-UGU-CC- -5'
33361 3' -66.1 NC_007605.1 + 159728 0.67 0.475372
Target:  5'- cCGUGGCCCCGggaGCCaCgGCGucaaACAGGu -3'
miRNA:   3'- uGCGCCGGGGC---CGG-GgCGCuc--UGUCC- -5'
33361 3' -66.1 NC_007605.1 + 32985 0.67 0.449757
Target:  5'- aACcCGGCCCgGGCCCCcCGGuauCGGGc -3'
miRNA:   3'- -UGcGCCGGGgCCGGGGcGCUcu-GUCC- -5'
33361 3' -66.1 NC_007605.1 + 26848 0.67 0.449757
Target:  5'- aACcCGGCCCgGGCCCCcCGGuauCGGGc -3'
miRNA:   3'- -UGcGCCGGGgCCGGGGcGCUcu-GUCC- -5'
33361 3' -66.1 NC_007605.1 + 20710 0.67 0.449757
Target:  5'- aACcCGGCCCgGGCCCCcCGGuauCGGGc -3'
miRNA:   3'- -UGcGCCGGGgCCGGGGcGCUcu-GUCC- -5'
33361 3' -66.1 NC_007605.1 + 17641 0.67 0.449757
Target:  5'- aACcCGGCCCgGGCCCCcCGGuauCGGGc -3'
miRNA:   3'- -UGcGCCGGGgCCGGGGcGCUcu-GUCC- -5'
33361 3' -66.1 NC_007605.1 + 27744 0.68 0.424921
Target:  5'- -aGCuGGCCCCgaggaGGCgCCCG-GAGugGGGc -3'
miRNA:   3'- ugCG-CCGGGG-----CCG-GGGCgCUCugUCC- -5'
33361 3' -66.1 NC_007605.1 + 30813 0.68 0.424921
Target:  5'- -aGCuGGCCCCgaggaGGCgCCCG-GAGugGGGc -3'
miRNA:   3'- ugCG-CCGGGG-----CCG-GGGCgCUCugUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.