miRNA display CGI


Results 61 - 80 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33361 3' -66.1 NC_007605.1 + 161942 0.68 0.397788
Target:  5'- aGCGCGGaggaguacucugaCCUGGCCCUcuuuGUG-GACGGGg -3'
miRNA:   3'- -UGCGCCg------------GGGCCGGGG----CGCuCUGUCC- -5'
33361 3' -66.1 NC_007605.1 + 38443 0.68 0.424921
Target:  5'- cCGCugGGCCgCuGCCCCGCuccGGGugGGGg -3'
miRNA:   3'- uGCG--CCGGgGcCGGGGCG---CUCugUCC- -5'
33361 3' -66.1 NC_007605.1 + 38318 0.68 0.424921
Target:  5'- cCGCugGGCCgCuGCCCCGCuccGGGugGGGg -3'
miRNA:   3'- uGCG--CCGGgGcCGGGGCG---CUCugUCC- -5'
33361 3' -66.1 NC_007605.1 + 12941 0.68 0.400922
Target:  5'- uCGgGGCCCaGGCCCCaGaguccaGAGGuCAGGg -3'
miRNA:   3'- uGCgCCGGGgCCGGGG-Cg-----CUCU-GUCC- -5'
33361 3' -66.1 NC_007605.1 + 16009 0.68 0.400922
Target:  5'- uCGgGGCCCaGGCCCCaGaguccaGAGGuCAGGg -3'
miRNA:   3'- uGCgCCGGGgCCGGGG-Cg-----CUCU-GUCC- -5'
33361 3' -66.1 NC_007605.1 + 19078 0.68 0.400922
Target:  5'- uCGgGGCCCaGGCCCCaGaguccaGAGGuCAGGg -3'
miRNA:   3'- uGCgCCGGGgCCGGGG-Cg-----CUCU-GUCC- -5'
33361 3' -66.1 NC_007605.1 + 22147 0.68 0.400922
Target:  5'- uCGgGGCCCaGGCCCCaGaguccaGAGGuCAGGg -3'
miRNA:   3'- uGCgCCGGGgCCGGGG-Cg-----CUCU-GUCC- -5'
33361 3' -66.1 NC_007605.1 + 25216 0.68 0.400922
Target:  5'- uCGgGGCCCaGGCCCCaGaguccaGAGGuCAGGg -3'
miRNA:   3'- uGCgCCGGGgCCGGGG-Cg-----CUCU-GUCC- -5'
33361 3' -66.1 NC_007605.1 + 28285 0.68 0.400922
Target:  5'- uCGgGGCCCaGGCCCCaGaguccaGAGGuCAGGg -3'
miRNA:   3'- uGCgCCGGGgCCGGGG-Cg-----CUCU-GUCC- -5'
33361 3' -66.1 NC_007605.1 + 31354 0.68 0.400922
Target:  5'- uCGgGGCCCaGGCCCCaGaguccaGAGGuCAGGg -3'
miRNA:   3'- uGCgCCGGGgCCGGGG-Cg-----CUCU-GUCC- -5'
33361 3' -66.1 NC_007605.1 + 34423 0.68 0.400922
Target:  5'- uCGgGGCCCaGGCCCCaGaguccaGAGGuCAGGg -3'
miRNA:   3'- uGCgCCGGGgCCGGGG-Cg-----CUCU-GUCC- -5'
33361 3' -66.1 NC_007605.1 + 126175 0.68 0.408826
Target:  5'- cCGgGGgCCCGGCCCggccaagaGCGaAGACgAGGa -3'
miRNA:   3'- uGCgCCgGGGCCGGGg-------CGC-UCUG-UCC- -5'
33361 3' -66.1 NC_007605.1 + 153997 0.68 0.416826
Target:  5'- gUGCGGCCCUGcagcGUCaCCGUcucggcgauggaGAGGCAGGg -3'
miRNA:   3'- uGCGCCGGGGC----CGG-GGCG------------CUCUGUCC- -5'
33361 3' -66.1 NC_007605.1 + 12399 0.68 0.424921
Target:  5'- -aGCuGGCCCCgaggaGGCgCCCG-GAGugGGGc -3'
miRNA:   3'- ugCG-CCGGGG-----CCG-GGGCgCUCugUCC- -5'
33361 3' -66.1 NC_007605.1 + 15468 0.68 0.424921
Target:  5'- -aGCuGGCCCCgaggaGGCgCCCG-GAGugGGGc -3'
miRNA:   3'- ugCG-CCGGGG-----CCG-GGGCgCUCugUCC- -5'
33361 3' -66.1 NC_007605.1 + 18537 0.68 0.424921
Target:  5'- -aGCuGGCCCCgaggaGGCgCCCG-GAGugGGGc -3'
miRNA:   3'- ugCG-CCGGGG-----CCG-GGGCgCUCugUCC- -5'
33361 3' -66.1 NC_007605.1 + 21606 0.68 0.424921
Target:  5'- -aGCuGGCCCCgaggaGGCgCCCG-GAGugGGGc -3'
miRNA:   3'- ugCG-CCGGGG-----CCG-GGGCgCUCugUCC- -5'
33361 3' -66.1 NC_007605.1 + 24675 0.68 0.424921
Target:  5'- -aGCuGGCCCCgaggaGGCgCCCG-GAGugGGGc -3'
miRNA:   3'- ugCG-CCGGGG-----CCG-GGGCgCUCugUCC- -5'
33361 3' -66.1 NC_007605.1 + 27744 0.68 0.424921
Target:  5'- -aGCuGGCCCCgaggaGGCgCCCG-GAGugGGGc -3'
miRNA:   3'- ugCG-CCGGGG-----CCG-GGGCgCUCugUCC- -5'
33361 3' -66.1 NC_007605.1 + 30813 0.68 0.424921
Target:  5'- -aGCuGGCCCCgaggaGGCgCCCG-GAGugGGGc -3'
miRNA:   3'- ugCG-CCGGGG-----CCG-GGGCgCUCugUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.