Results 1 - 20 of 155 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
33361 | 3' | -66.1 | NC_007605.1 | + | 123804 | 1.08 | 0.000627 |
Target: 5'- aACGCGGCCCCGGCCCCGCGAGACAGGc -3' miRNA: 3'- -UGCGCCGGGGCCGGGGCGCUCUGUCC- -5' |
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33361 | 3' | -66.1 | NC_007605.1 | + | 40186 | 0.78 | 0.094806 |
Target: 5'- gGCGUGGUCCUGGgaCCCCGCGccgacuGGCAGGg -3' miRNA: 3'- -UGCGCCGGGGCC--GGGGCGCu-----CUGUCC- -5' |
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33361 | 3' | -66.1 | NC_007605.1 | + | 58268 | 0.78 | 0.088118 |
Target: 5'- cCGCGGCCCCGGCCuCCGCGGcccCGGc -3' miRNA: 3'- uGCGCCGGGGCCGG-GGCGCUcu-GUCc -5' |
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33361 | 3' | -66.1 | NC_007605.1 | + | 58298 | 0.78 | 0.088118 |
Target: 5'- cCGCGGCCCCGGCCuCCGCGGcccCGGc -3' miRNA: 3'- uGCGCCGGGGCCGG-GGCGCUcu-GUCc -5' |
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33361 | 3' | -66.1 | NC_007605.1 | + | 160196 | 0.77 | 0.10703 |
Target: 5'- gGCGCGGUCCCGGgCCCGgGGcGGCcGGa -3' miRNA: 3'- -UGCGCCGGGGCCgGGGCgCU-CUGuCC- -5' |
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33361 | 3' | -66.1 | NC_007605.1 | + | 88031 | 0.76 | 0.132831 |
Target: 5'- uGCGaGGCCCCgcggcaggaGGCCCCGCGGcaggaggcccgcGGCAGGa -3' miRNA: 3'- -UGCgCCGGGG---------CCGGGGCGCU------------CUGUCC- -5' |
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33361 | 3' | -66.1 | NC_007605.1 | + | 87978 | 0.74 | 0.171695 |
Target: 5'- cCGCGGCaggaGGCCCCGCGGcaggaggccccgcGGCAGGa -3' miRNA: 3'- uGCGCCGggg-CCGGGGCGCU-------------CUGUCC- -5' |
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33361 | 3' | -66.1 | NC_007605.1 | + | 61367 | 0.73 | 0.206866 |
Target: 5'- -gGUGGCggCGGCCCCGCG-GACAGa -3' miRNA: 3'- ugCGCCGggGCCGGGGCGCuCUGUCc -5' |
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33361 | 3' | -66.1 | NC_007605.1 | + | 58343 | 0.73 | 0.197642 |
Target: 5'- cUGCGGCCCCGGCCuCUGCGGcccCGGc -3' miRNA: 3'- uGCGCCGGGGCCGG-GGCGCUcu-GUCc -5' |
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33361 | 3' | -66.1 | NC_007605.1 | + | 58758 | 0.73 | 0.206866 |
Target: 5'- gAUGCGGCCCCGGgcacCCCCGCccaugucaGAGuCAGc -3' miRNA: 3'- -UGCGCCGGGGCC----GGGGCG--------CUCuGUCc -5' |
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33361 | 3' | -66.1 | NC_007605.1 | + | 51707 | 0.73 | 0.211617 |
Target: 5'- -gGCGGCCCUGGCCUCgGUGAGAa--- -3' miRNA: 3'- ugCGCCGGGGCCGGGG-CGCUCUgucc -5' |
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33361 | 3' | -66.1 | NC_007605.1 | + | 40258 | 0.72 | 0.2214 |
Target: 5'- cCGCGGCCCagCGcGCCCCGUucacGGGGgAGGa -3' miRNA: 3'- uGCGCCGGG--GC-CGGGGCG----CUCUgUCC- -5' |
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33361 | 3' | -66.1 | NC_007605.1 | + | 99161 | 0.72 | 0.216461 |
Target: 5'- cCGaGGCCgCCGGCuCCCGCGccggucaggGGACGGGc -3' miRNA: 3'- uGCgCCGG-GGCCG-GGGCGC---------UCUGUCC- -5' |
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33361 | 3' | -66.1 | NC_007605.1 | + | 49693 | 0.71 | 0.281631 |
Target: 5'- gGCGCugaugaugccaaGGCCCCGGUCCCagcggaugcgGCGgccugagccugcuGGACGGGg -3' miRNA: 3'- -UGCG------------CCGGGGCCGGGG----------CGC-------------UCUGUCC- -5' |
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33361 | 3' | -66.1 | NC_007605.1 | + | 150948 | 0.71 | 0.258703 |
Target: 5'- gGCGCGGCCUCGGCUgggaCaCGGGACGuGGu -3' miRNA: 3'- -UGCGCCGGGGCCGGg---GcGCUCUGU-CC- -5' |
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33361 | 3' | -66.1 | NC_007605.1 | + | 101163 | 0.71 | 0.28224 |
Target: 5'- aAUGCGGCCCCGGCggua-GAGugGGGu -3' miRNA: 3'- -UGCGCCGGGGCCGgggcgCUCugUCC- -5' |
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33361 | 3' | -66.1 | NC_007605.1 | + | 40292 | 0.71 | 0.258703 |
Target: 5'- cCGCGGCCgagCCaccaggGGCCCgGCGGGGguGGg -3' miRNA: 3'- uGCGCCGG---GG------CCGGGgCGCUCUguCC- -5' |
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33361 | 3' | -66.1 | NC_007605.1 | + | 61628 | 0.7 | 0.300344 |
Target: 5'- -gGUGGCCUCGaGCCaccuccaCCGCGAG-CGGGa -3' miRNA: 3'- ugCGCCGGGGC-CGG-------GGCGCUCuGUCC- -5' |
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33361 | 3' | -66.1 | NC_007605.1 | + | 66279 | 0.7 | 0.294631 |
Target: 5'- aGCGCGGCUcugUCGGUgCCGCGGGAggaaCAGa -3' miRNA: 3'- -UGCGCCGG---GGCCGgGGCGCUCU----GUCc -5' |
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33361 | 3' | -66.1 | NC_007605.1 | + | 136317 | 0.7 | 0.288383 |
Target: 5'- cUGCGGaggUUCGGCCgCCGCGGGcCAGGa -3' miRNA: 3'- uGCGCCg--GGGCCGG-GGCGCUCuGUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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