miRNA display CGI


Results 41 - 60 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33361 3' -66.1 NC_007605.1 + 141733 0.69 0.341315
Target:  5'- cCGgGGUUCCGGCCCUG-GAGcuCGGGg -3'
miRNA:   3'- uGCgCCGGGGCCGGGGCgCUCu-GUCC- -5'
33361 3' -66.1 NC_007605.1 + 61500 0.69 0.3703
Target:  5'- --aCGGCCUCGGCCuCCGCcc-GCAGGu -3'
miRNA:   3'- ugcGCCGGGGCCGG-GGCGcucUGUCC- -5'
33361 3' -66.1 NC_007605.1 + 142752 0.69 0.341315
Target:  5'- cCGgGGUUCCGGCCCUG-GAGcuCGGGg -3'
miRNA:   3'- uGCgCCGGGGCCGGGGCgCUCu-GUCC- -5'
33361 3' -66.1 NC_007605.1 + 142651 0.69 0.341315
Target:  5'- cCGgGGUUCCGGCCCUG-GAGcuCGGGg -3'
miRNA:   3'- uGCgCCGGGGCCGGGGCgCUCu-GUCC- -5'
33361 3' -66.1 NC_007605.1 + 142549 0.69 0.341315
Target:  5'- cCGgGGUUCCGGCCCUG-GAGcuCGGGg -3'
miRNA:   3'- uGCgCCGGGGCCGGGGCgCUCu-GUCC- -5'
33361 3' -66.1 NC_007605.1 + 142447 0.69 0.341315
Target:  5'- cCGgGGUUCCGGCCCUG-GAGcuCGGGg -3'
miRNA:   3'- uGCgCCGGGGCCGGGGCgCUCu-GUCC- -5'
33361 3' -66.1 NC_007605.1 + 142345 0.69 0.341315
Target:  5'- cCGgGGUUCCGGCCCUG-GAGcuCGGGg -3'
miRNA:   3'- uGCgCCGGGGCCGGGGCgCUCu-GUCC- -5'
33361 3' -66.1 NC_007605.1 + 142243 0.69 0.341315
Target:  5'- cCGgGGUUCCGGCCCUG-GAGcuCGGGg -3'
miRNA:   3'- uGCgCCGGGGCCGGGGCgCUCu-GUCC- -5'
33361 3' -66.1 NC_007605.1 + 142141 0.69 0.341315
Target:  5'- cCGgGGUUCCGGCCCUG-GAGcuCGGGg -3'
miRNA:   3'- uGCgCCGGGGCCGGGGCgCUCu-GUCC- -5'
33361 3' -66.1 NC_007605.1 + 142039 0.69 0.341315
Target:  5'- cCGgGGUUCCGGCCCUG-GAGcuCGGGg -3'
miRNA:   3'- uGCgCCGGGGCCGGGGCgCUCu-GUCC- -5'
33361 3' -66.1 NC_007605.1 + 141835 0.69 0.341315
Target:  5'- cCGgGGUUCCGGCCCUG-GAGcuCGGGg -3'
miRNA:   3'- uGCgCCGGGGCCGGGGCgCUCu-GUCC- -5'
33361 3' -66.1 NC_007605.1 + 142956 0.69 0.341315
Target:  5'- cCGgGGUUCCGGCCCUG-GAGcuCGGGg -3'
miRNA:   3'- uGCgCCGGGGCCGGGGCgCUCu-GUCC- -5'
33361 3' -66.1 NC_007605.1 + 161283 0.69 0.355599
Target:  5'- uGCGCaGCCCa-GCCCCGgGGGccugcaGCAGGu -3'
miRNA:   3'- -UGCGcCGGGgcCGGGGCgCUC------UGUCC- -5'
33361 3' -66.1 NC_007605.1 + 63061 0.69 0.355599
Target:  5'- cGCGCagGGCUgCUGGCCCCGgGGGAgguggcggucgcCGGGg -3'
miRNA:   3'- -UGCG--CCGG-GGCCGGGGCgCUCU------------GUCC- -5'
33361 3' -66.1 NC_007605.1 + 161765 0.69 0.348405
Target:  5'- cCGCG---CUGGCCCCGCugGGGACAGGg -3'
miRNA:   3'- uGCGCcggGGCCGGGGCG--CUCUGUCC- -5'
33361 3' -66.1 NC_007605.1 + 171119 0.69 0.346978
Target:  5'- cCGCGGCCCCccaGCCCCcccgcacagagcgGCGcuacggcGGGCGGGc -3'
miRNA:   3'- uGCGCCGGGGc--CGGGG-------------CGC-------UCUGUCC- -5'
33361 3' -66.1 NC_007605.1 + 170582 0.69 0.346978
Target:  5'- cCGCGGCCCCccaGCCCCcccgcacagagcgGCGcuacggcGGGCGGGc -3'
miRNA:   3'- uGCGCCGGGGc--CGGGG-------------CGC-------UCUGUCC- -5'
33361 3' -66.1 NC_007605.1 + 170059 0.69 0.346978
Target:  5'- cCGCGGCCCCccaGCCCCcccgcacagagcgGCGcuacggcGGGCGGGc -3'
miRNA:   3'- uGCGCCGGGGc--CGGGG-------------CGC-------UCUGUCC- -5'
33361 3' -66.1 NC_007605.1 + 169522 0.69 0.346978
Target:  5'- cCGCGGCCCCccaGCCCCcccgcacagagcgGCGcuacggcGGGCGGGc -3'
miRNA:   3'- uGCGCCGGGGc--CGGGG-------------CGC-------UCUGUCC- -5'
33361 3' -66.1 NC_007605.1 + 143058 0.69 0.341315
Target:  5'- cCGgGGUUCCGGCCCUG-GAGcuCGGGg -3'
miRNA:   3'- uGCgCCGGGGCCGGGGCgCUCu-GUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.