miRNA display CGI


Results 21 - 40 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33361 3' -66.1 NC_007605.1 + 66279 0.7 0.294631
Target:  5'- aGCGCGGCUcugUCGGUgCCGCGGGAggaaCAGa -3'
miRNA:   3'- -UGCGCCGG---GGCCGgGGCGCUCU----GUCc -5'
33361 3' -66.1 NC_007605.1 + 61628 0.7 0.300344
Target:  5'- -gGUGGCCUCGaGCCaccuccaCCGCGAG-CGGGa -3'
miRNA:   3'- ugCGCCGGGGC-CGG-------GGCGCUCuGUCC- -5'
33361 3' -66.1 NC_007605.1 + 159276 0.7 0.300984
Target:  5'- aACGUGGCCCUGGCUcgcugCUGUGAcgccGCAGGu -3'
miRNA:   3'- -UGCGCCGGGGCCGG-----GGCGCUc---UGUCC- -5'
33361 3' -66.1 NC_007605.1 + 161064 0.7 0.307442
Target:  5'- aGCGUGGCCgagCCGGUCagcaCCGCGucGCAGGc -3'
miRNA:   3'- -UGCGCCGG---GGCCGG----GGCGCucUGUCC- -5'
33361 3' -66.1 NC_007605.1 + 67237 0.69 0.334329
Target:  5'- cAUuaGGCCCCGGaCCCGC-AG-CAGGg -3'
miRNA:   3'- -UGcgCCGGGGCCgGGGCGcUCuGUCC- -5'
33361 3' -66.1 NC_007605.1 + 142752 0.69 0.341315
Target:  5'- cCGgGGUUCCGGCCCUG-GAGcuCGGGg -3'
miRNA:   3'- uGCgCCGGGGCCGGGGCgCUCu-GUCC- -5'
33361 3' -66.1 NC_007605.1 + 141835 0.69 0.341315
Target:  5'- cCGgGGUUCCGGCCCUG-GAGcuCGGGg -3'
miRNA:   3'- uGCgCCGGGGCCGGGGCgCUCu-GUCC- -5'
33361 3' -66.1 NC_007605.1 + 142651 0.69 0.341315
Target:  5'- cCGgGGUUCCGGCCCUG-GAGcuCGGGg -3'
miRNA:   3'- uGCgCCGGGGCCGGGGCgCUCu-GUCC- -5'
33361 3' -66.1 NC_007605.1 + 142549 0.69 0.341315
Target:  5'- cCGgGGUUCCGGCCCUG-GAGcuCGGGg -3'
miRNA:   3'- uGCgCCGGGGCCGGGGCgCUCu-GUCC- -5'
33361 3' -66.1 NC_007605.1 + 140918 0.69 0.341315
Target:  5'- cCGgGGUUCCGGCCCUG-GAGcuCGGGg -3'
miRNA:   3'- uGCgCCGGGGCCGGGGCgCUCu-GUCC- -5'
33361 3' -66.1 NC_007605.1 + 141020 0.69 0.341315
Target:  5'- cCGgGGUUCCGGCCCUG-GAGcuCGGGg -3'
miRNA:   3'- uGCgCCGGGGCCGGGGCgCUCu-GUCC- -5'
33361 3' -66.1 NC_007605.1 + 141122 0.69 0.341315
Target:  5'- cCGgGGUUCCGGCCCUG-GAGcuCGGGg -3'
miRNA:   3'- uGCgCCGGGGCCGGGGCgCUCu-GUCC- -5'
33361 3' -66.1 NC_007605.1 + 141224 0.69 0.341315
Target:  5'- cCGgGGUUCCGGCCCUG-GAGcuCGGGg -3'
miRNA:   3'- uGCgCCGGGGCCGGGGCgCUCu-GUCC- -5'
33361 3' -66.1 NC_007605.1 + 141937 0.69 0.341315
Target:  5'- cCGgGGUUCCGGCCCUG-GAGcuCGGGg -3'
miRNA:   3'- uGCgCCGGGGCCGGGGCgCUCu-GUCC- -5'
33361 3' -66.1 NC_007605.1 + 142039 0.69 0.341315
Target:  5'- cCGgGGUUCCGGCCCUG-GAGcuCGGGg -3'
miRNA:   3'- uGCgCCGGGGCCGGGGCgCUCu-GUCC- -5'
33361 3' -66.1 NC_007605.1 + 142141 0.69 0.341315
Target:  5'- cCGgGGUUCCGGCCCUG-GAGcuCGGGg -3'
miRNA:   3'- uGCgCCGGGGCCGGGGCgCUCu-GUCC- -5'
33361 3' -66.1 NC_007605.1 + 142243 0.69 0.341315
Target:  5'- cCGgGGUUCCGGCCCUG-GAGcuCGGGg -3'
miRNA:   3'- uGCgCCGGGGCCGGGGCgCUCu-GUCC- -5'
33361 3' -66.1 NC_007605.1 + 142345 0.69 0.341315
Target:  5'- cCGgGGUUCCGGCCCUG-GAGcuCGGGg -3'
miRNA:   3'- uGCgCCGGGGCCGGGGCgCUCu-GUCC- -5'
33361 3' -66.1 NC_007605.1 + 142447 0.69 0.341315
Target:  5'- cCGgGGUUCCGGCCCUG-GAGcuCGGGg -3'
miRNA:   3'- uGCgCCGGGGCCGGGGCgCUCu-GUCC- -5'
33361 3' -66.1 NC_007605.1 + 142854 0.69 0.341315
Target:  5'- cCGgGGUUCCGGCCCUG-GAGcuCGGGg -3'
miRNA:   3'- uGCgCCGGGGCCGGGGCgCUCu-GUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.