miRNA display CGI


Results 21 - 40 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33361 3' -66.1 NC_007605.1 + 31164 0.66 0.501693
Target:  5'- gAC-CGGCCCCGcGCCUgGCGccuccuCGGGg -3'
miRNA:   3'- -UGcGCCGGGGC-CGGGgCGCucu---GUCC- -5'
33361 3' -66.1 NC_007605.1 + 60439 0.66 0.501693
Target:  5'- gGCGCcuccuGGUgCCGGCCCUcaGgGAGAgcCGGGg -3'
miRNA:   3'- -UGCG-----CCGgGGCCGGGG--CgCUCU--GUCC- -5'
33361 3' -66.1 NC_007605.1 + 12751 0.66 0.501693
Target:  5'- gAC-CGGCCCCGcGCCUgGCGccuccuCGGGg -3'
miRNA:   3'- -UGcGCCGGGGC-CGGGgCGCucu---GUCC- -5'
33361 3' -66.1 NC_007605.1 + 18889 0.66 0.501693
Target:  5'- gAC-CGGCCCCGcGCCUgGCGccuccuCGGGg -3'
miRNA:   3'- -UGcGCCGGGGC-CGGGgCGCucu---GUCC- -5'
33361 3' -66.1 NC_007605.1 + 15820 0.66 0.501693
Target:  5'- gAC-CGGCCCCGcGCCUgGCGccuccuCGGGg -3'
miRNA:   3'- -UGcGCCGGGGC-CGGGgCGCucu---GUCC- -5'
33361 3' -66.1 NC_007605.1 + 119752 0.66 0.501693
Target:  5'- gUGUGGCUcggcucagguuCCGGCCCUGgGAcGGCAGc -3'
miRNA:   3'- uGCGCCGG-----------GGCCGGGGCgCU-CUGUCc -5'
33361 3' -66.1 NC_007605.1 + 34233 0.66 0.501693
Target:  5'- gAC-CGGCCCCGcGCCUgGCGccuccuCGGGg -3'
miRNA:   3'- -UGcGCCGGGGC-CGGGgCGCucu---GUCC- -5'
33361 3' -66.1 NC_007605.1 + 151398 0.66 0.501693
Target:  5'- --aCGGCCagGGCCUCGUaggccGAGACGGGc -3'
miRNA:   3'- ugcGCCGGggCCGGGGCG-----CUCUGUCC- -5'
33361 3' -66.1 NC_007605.1 + 104737 0.66 0.492846
Target:  5'- aGCGCG--CCCGGCCCCcuGCcAGACGGc -3'
miRNA:   3'- -UGCGCcgGGGCCGGGG--CGcUCUGUCc -5'
33361 3' -66.1 NC_007605.1 + 154144 0.66 0.492846
Target:  5'- uCGUggaGGCCCUGaGCCCCGCcaaccuGCAGGc -3'
miRNA:   3'- uGCG---CCGGGGC-CGGGGCGcuc---UGUCC- -5'
33361 3' -66.1 NC_007605.1 + 165964 0.66 0.492846
Target:  5'- gGCGCGGguCCCCcuaGCCCCgGCGGGGauccGGa -3'
miRNA:   3'- -UGCGCC--GGGGc--CGGGG-CGCUCUgu--CC- -5'
33361 3' -66.1 NC_007605.1 + 162039 0.67 0.487572
Target:  5'- cCGcCGGCcguacaCCCGGCCCUGCaGGGccgcguccaggucugGCAGGu -3'
miRNA:   3'- uGC-GCCG------GGGCCGGGGCG-CUC---------------UGUCC- -5'
33361 3' -66.1 NC_007605.1 + 160257 0.67 0.484071
Target:  5'- gGCGgGGCUCgGGCaCCUGUugGAGGCugAGGa -3'
miRNA:   3'- -UGCgCCGGGgCCG-GGGCG--CUCUG--UCC- -5'
33361 3' -66.1 NC_007605.1 + 115325 0.67 0.484071
Target:  5'- --uCGGCCCCGGCCCUaaGUcuGAGcccCAGGc -3'
miRNA:   3'- ugcGCCGGGGCCGGGG--CG--CUCu--GUCC- -5'
33361 3' -66.1 NC_007605.1 + 151035 0.67 0.484071
Target:  5'- aGCG-GGCCCaugaaGGCCCgggggcugGCGAGGCGGc -3'
miRNA:   3'- -UGCgCCGGGg----CCGGGg-------CGCUCUGUCc -5'
33361 3' -66.1 NC_007605.1 + 21954 0.67 0.475372
Target:  5'- aGCGacCGGCCCCGcGCCUgGCGccuccuCGGGg -3'
miRNA:   3'- -UGC--GCCGGGGC-CGGGgCGCucu---GUCC- -5'
33361 3' -66.1 NC_007605.1 + 61713 0.67 0.475372
Target:  5'- gUGUGGCCCgGGCggccuaCCUGCG-GGCGGa -3'
miRNA:   3'- uGCGCCGGGgCCG------GGGCGCuCUGUCc -5'
33361 3' -66.1 NC_007605.1 + 124747 0.67 0.475372
Target:  5'- cCGUGGCCUCGGCCCUacaguuugggGUcgaugcccugGAGAgGGGc -3'
miRNA:   3'- uGCGCCGGGGCCGGGG----------CG----------CUCUgUCC- -5'
33361 3' -66.1 NC_007605.1 + 162766 0.67 0.475372
Target:  5'- cCGgGG-CCCGGCCCUcgcagaGCGAGcACAuGGg -3'
miRNA:   3'- uGCgCCgGGGCCGGGG------CGCUC-UGU-CC- -5'
33361 3' -66.1 NC_007605.1 + 159728 0.67 0.475372
Target:  5'- cCGUGGCCCCGggaGCCaCgGCGucaaACAGGu -3'
miRNA:   3'- uGCGCCGGGGC---CGG-GgCGCuc--UGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.