Results 41 - 60 of 155 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
33361 | 3' | -66.1 | NC_007605.1 | + | 159990 | 0.67 | 0.466751 |
Target: 5'- uCGCcuGGCCCUGGUgcggggggCCUGCGAGgaggcgcugGCGGGg -3' miRNA: 3'- uGCG--CCGGGGCCG--------GGGCGCUC---------UGUCC- -5' |
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33361 | 3' | -66.1 | NC_007605.1 | + | 40468 | 0.67 | 0.466751 |
Target: 5'- cCGCGGUCCUc-CCCCGUGA-ACGGGg -3' miRNA: 3'- uGCGCCGGGGccGGGGCGCUcUGUCC- -5' |
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33361 | 3' | -66.1 | NC_007605.1 | + | 91938 | 0.67 | 0.466751 |
Target: 5'- -gGCcagGGCCgaGGCCCCGCGccuGCGGGc -3' miRNA: 3'- ugCG---CCGGggCCGGGGCGCuc-UGUCC- -5' |
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33361 | 3' | -66.1 | NC_007605.1 | + | 54629 | 0.67 | 0.458212 |
Target: 5'- -gGCGGCCgaugccauccguUCGGCCCuCGCGcAGACGc- -3' miRNA: 3'- ugCGCCGG------------GGCCGGG-GCGC-UCUGUcc -5' |
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33361 | 3' | -66.1 | NC_007605.1 | + | 50356 | 0.67 | 0.458212 |
Target: 5'- gGCGgGGCCgCGGugggcugcCCCCGa-GGACGGGc -3' miRNA: 3'- -UGCgCCGGgGCC--------GGGGCgcUCUGUCC- -5' |
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33361 | 3' | -66.1 | NC_007605.1 | + | 23779 | 0.67 | 0.449757 |
Target: 5'- aACcCGGCCCgGGCCCCcCGGuauCGGGc -3' miRNA: 3'- -UGcGCCGGGgCCGGGGcGCUcu-GUCC- -5' |
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33361 | 3' | -66.1 | NC_007605.1 | + | 14572 | 0.67 | 0.449757 |
Target: 5'- aACcCGGCCCgGGCCCCcCGGuauCGGGc -3' miRNA: 3'- -UGcGCCGGGgCCGGGGcGCUcu-GUCC- -5' |
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33361 | 3' | -66.1 | NC_007605.1 | + | 32985 | 0.67 | 0.449757 |
Target: 5'- aACcCGGCCCgGGCCCCcCGGuauCGGGc -3' miRNA: 3'- -UGcGCCGGGgCCGGGGcGCUcu-GUCC- -5' |
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33361 | 3' | -66.1 | NC_007605.1 | + | 26848 | 0.67 | 0.449757 |
Target: 5'- aACcCGGCCCgGGCCCCcCGGuauCGGGc -3' miRNA: 3'- -UGcGCCGGGgCCGGGGcGCUcu-GUCC- -5' |
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33361 | 3' | -66.1 | NC_007605.1 | + | 20710 | 0.67 | 0.449757 |
Target: 5'- aACcCGGCCCgGGCCCCcCGGuauCGGGc -3' miRNA: 3'- -UGcGCCGGGgCCGGGGcGCUcu-GUCC- -5' |
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33361 | 3' | -66.1 | NC_007605.1 | + | 159024 | 0.67 | 0.449757 |
Target: 5'- gACGCGgucaGCCCCggccaGGCCCUGCccccGGAUGGGc -3' miRNA: 3'- -UGCGC----CGGGG-----CCGGGGCGc---UCUGUCC- -5' |
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33361 | 3' | -66.1 | NC_007605.1 | + | 17641 | 0.67 | 0.449757 |
Target: 5'- aACcCGGCCCgGGCCCCcCGGuauCGGGc -3' miRNA: 3'- -UGcGCCGGGgCCGGGGcGCUcu-GUCC- -5' |
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33361 | 3' | -66.1 | NC_007605.1 | + | 99755 | 0.67 | 0.448916 |
Target: 5'- gGCGCuGUCCCGGgCCCggcacucuaauuGCGuggucauGGACAGGa -3' miRNA: 3'- -UGCGcCGGGGCCgGGG------------CGC-------UCUGUCC- -5' |
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33361 | 3' | -66.1 | NC_007605.1 | + | 49805 | 0.67 | 0.441389 |
Target: 5'- uUGCGGCgaagCUGGCUCacgaaGCGAGACAGu -3' miRNA: 3'- uGCGCCGg---GGCCGGGg----CGCUCUGUCc -5' |
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33361 | 3' | -66.1 | NC_007605.1 | + | 29917 | 0.67 | 0.441389 |
Target: 5'- aACcCGGCCCgGGCCCCcCGGuAUGGGc -3' miRNA: 3'- -UGcGCCGGGgCCGGGGcGCUcUGUCC- -5' |
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33361 | 3' | -66.1 | NC_007605.1 | + | 101046 | 0.67 | 0.441389 |
Target: 5'- -gGCGGCCauaaUGGaCCCCGCGcaguacguGGGCuGGa -3' miRNA: 3'- ugCGCCGGg---GCC-GGGGCGC--------UCUGuCC- -5' |
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33361 | 3' | -66.1 | NC_007605.1 | + | 59316 | 0.67 | 0.433109 |
Target: 5'- cCGgGGaaCCGGCCCCGUGcgcGGAauCAGGa -3' miRNA: 3'- uGCgCCggGGCCGGGGCGC---UCU--GUCC- -5' |
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33361 | 3' | -66.1 | NC_007605.1 | + | 115467 | 0.67 | 0.433109 |
Target: 5'- cCGCGGCCaCCGGCauaugcucuauaCCCGCcccuccggGGGGCccAGGa -3' miRNA: 3'- uGCGCCGG-GGCCG------------GGGCG--------CUCUG--UCC- -5' |
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33361 | 3' | -66.1 | NC_007605.1 | + | 27744 | 0.68 | 0.424921 |
Target: 5'- -aGCuGGCCCCgaggaGGCgCCCG-GAGugGGGc -3' miRNA: 3'- ugCG-CCGGGG-----CCG-GGGCgCUCugUCC- -5' |
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33361 | 3' | -66.1 | NC_007605.1 | + | 30813 | 0.68 | 0.424921 |
Target: 5'- -aGCuGGCCCCgaggaGGCgCCCG-GAGugGGGc -3' miRNA: 3'- ugCG-CCGGGG-----CCG-GGGCgCUCugUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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