miRNA display CGI


Results 81 - 100 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33361 3' -66.1 NC_007605.1 + 126175 0.68 0.408826
Target:  5'- cCGgGGgCCCGGCCCggccaagaGCGaAGACgAGGa -3'
miRNA:   3'- uGCgCCgGGGCCGGGg-------CGC-UCUG-UCC- -5'
33361 3' -66.1 NC_007605.1 + 56120 0.68 0.408826
Target:  5'- -aGCGGuaucCCCUGGCCCCuggaGCGAGuugAGGa -3'
miRNA:   3'- ugCGCC----GGGGCCGGGG----CGCUCug-UCC- -5'
33361 3' -66.1 NC_007605.1 + 31354 0.68 0.400922
Target:  5'- uCGgGGCCCaGGCCCCaGaguccaGAGGuCAGGg -3'
miRNA:   3'- uGCgCCGGGgCCGGGG-Cg-----CUCU-GUCC- -5'
33361 3' -66.1 NC_007605.1 + 22147 0.68 0.400922
Target:  5'- uCGgGGCCCaGGCCCCaGaguccaGAGGuCAGGg -3'
miRNA:   3'- uGCgCCGGGgCCGGGG-Cg-----CUCU-GUCC- -5'
33361 3' -66.1 NC_007605.1 + 28285 0.68 0.400922
Target:  5'- uCGgGGCCCaGGCCCCaGaguccaGAGGuCAGGg -3'
miRNA:   3'- uGCgCCGGGgCCGGGG-Cg-----CUCU-GUCC- -5'
33361 3' -66.1 NC_007605.1 + 25216 0.68 0.400922
Target:  5'- uCGgGGCCCaGGCCCCaGaguccaGAGGuCAGGg -3'
miRNA:   3'- uGCgCCGGGgCCGGGG-Cg-----CUCU-GUCC- -5'
33361 3' -66.1 NC_007605.1 + 19078 0.68 0.400922
Target:  5'- uCGgGGCCCaGGCCCCaGaguccaGAGGuCAGGg -3'
miRNA:   3'- uGCgCCGGGgCCGGGG-Cg-----CUCU-GUCC- -5'
33361 3' -66.1 NC_007605.1 + 16009 0.68 0.400922
Target:  5'- uCGgGGCCCaGGCCCCaGaguccaGAGGuCAGGg -3'
miRNA:   3'- uGCgCCGGGgCCGGGG-Cg-----CUCU-GUCC- -5'
33361 3' -66.1 NC_007605.1 + 34423 0.68 0.400922
Target:  5'- uCGgGGCCCaGGCCCCaGaguccaGAGGuCAGGg -3'
miRNA:   3'- uGCgCCGGGgCCGGGG-Cg-----CUCU-GUCC- -5'
33361 3' -66.1 NC_007605.1 + 12941 0.68 0.400922
Target:  5'- uCGgGGCCCaGGCCCCaGaguccaGAGGuCAGGg -3'
miRNA:   3'- uGCgCCGGGgCCGGGG-Cg-----CUCU-GUCC- -5'
33361 3' -66.1 NC_007605.1 + 161942 0.68 0.397788
Target:  5'- aGCGCGGaggaguacucugaCCUGGCCCUcuuuGUG-GACGGGg -3'
miRNA:   3'- -UGCGCCg------------GGGCCGGGG----CGCuCUGUCC- -5'
33361 3' -66.1 NC_007605.1 + 48961 0.68 0.393116
Target:  5'- cAUGCGGCCggUGGUCCUGCGGGGggugacgguCAGGc -3'
miRNA:   3'- -UGCGCCGGg-GCCGGGGCGCUCU---------GUCC- -5'
33361 3' -66.1 NC_007605.1 + 11081 0.68 0.393116
Target:  5'- gACGCagGGCUCgcaaaguauagUGGCCCCGUGGGACcuuagAGGu -3'
miRNA:   3'- -UGCG--CCGGG-----------GCCGGGGCGCUCUG-----UCC- -5'
33361 3' -66.1 NC_007605.1 + 162848 0.68 0.377804
Target:  5'- -gGgGGCCCgGGCUCCuacaaCGAGACGGa -3'
miRNA:   3'- ugCgCCGGGgCCGGGGc----GCUCUGUCc -5'
33361 3' -66.1 NC_007605.1 + 61500 0.69 0.3703
Target:  5'- --aCGGCCUCGGCCuCCGCcc-GCAGGu -3'
miRNA:   3'- ugcGCCGGGGCCGG-GGCGcucUGUCC- -5'
33361 3' -66.1 NC_007605.1 + 169658 0.69 0.3703
Target:  5'- uGCGCGGCCCCccauGCCCCaGCaAGccGCAGc -3'
miRNA:   3'- -UGCGCCGGGGc---CGGGG-CGcUC--UGUCc -5'
33361 3' -66.1 NC_007605.1 + 120028 0.69 0.362898
Target:  5'- ---aGGCUCCGGCCCCaCGAccucgggaggGACGGGc -3'
miRNA:   3'- ugcgCCGGGGCCGGGGcGCU----------CUGUCC- -5'
33361 3' -66.1 NC_007605.1 + 157632 0.69 0.358506
Target:  5'- cCGCGGCCCgCGGgagcacccCCgCCGCcguucugaggcgucgGAGGCGGGa -3'
miRNA:   3'- uGCGCCGGG-GCC--------GG-GGCG---------------CUCUGUCC- -5'
33361 3' -66.1 NC_007605.1 + 161283 0.69 0.355599
Target:  5'- uGCGCaGCCCa-GCCCCGgGGGccugcaGCAGGu -3'
miRNA:   3'- -UGCGcCGGGgcCGGGGCgCUC------UGUCC- -5'
33361 3' -66.1 NC_007605.1 + 63061 0.69 0.355599
Target:  5'- cGCGCagGGCUgCUGGCCCCGgGGGAgguggcggucgcCGGGg -3'
miRNA:   3'- -UGCG--CCGG-GGCCGGGGCgCUCU------------GUCC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.