Results 81 - 100 of 155 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33361 | 3' | -66.1 | NC_007605.1 | + | 126175 | 0.68 | 0.408826 |
Target: 5'- cCGgGGgCCCGGCCCggccaagaGCGaAGACgAGGa -3' miRNA: 3'- uGCgCCgGGGCCGGGg-------CGC-UCUG-UCC- -5' |
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33361 | 3' | -66.1 | NC_007605.1 | + | 56120 | 0.68 | 0.408826 |
Target: 5'- -aGCGGuaucCCCUGGCCCCuggaGCGAGuugAGGa -3' miRNA: 3'- ugCGCC----GGGGCCGGGG----CGCUCug-UCC- -5' |
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33361 | 3' | -66.1 | NC_007605.1 | + | 31354 | 0.68 | 0.400922 |
Target: 5'- uCGgGGCCCaGGCCCCaGaguccaGAGGuCAGGg -3' miRNA: 3'- uGCgCCGGGgCCGGGG-Cg-----CUCU-GUCC- -5' |
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33361 | 3' | -66.1 | NC_007605.1 | + | 22147 | 0.68 | 0.400922 |
Target: 5'- uCGgGGCCCaGGCCCCaGaguccaGAGGuCAGGg -3' miRNA: 3'- uGCgCCGGGgCCGGGG-Cg-----CUCU-GUCC- -5' |
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33361 | 3' | -66.1 | NC_007605.1 | + | 28285 | 0.68 | 0.400922 |
Target: 5'- uCGgGGCCCaGGCCCCaGaguccaGAGGuCAGGg -3' miRNA: 3'- uGCgCCGGGgCCGGGG-Cg-----CUCU-GUCC- -5' |
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33361 | 3' | -66.1 | NC_007605.1 | + | 25216 | 0.68 | 0.400922 |
Target: 5'- uCGgGGCCCaGGCCCCaGaguccaGAGGuCAGGg -3' miRNA: 3'- uGCgCCGGGgCCGGGG-Cg-----CUCU-GUCC- -5' |
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33361 | 3' | -66.1 | NC_007605.1 | + | 19078 | 0.68 | 0.400922 |
Target: 5'- uCGgGGCCCaGGCCCCaGaguccaGAGGuCAGGg -3' miRNA: 3'- uGCgCCGGGgCCGGGG-Cg-----CUCU-GUCC- -5' |
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33361 | 3' | -66.1 | NC_007605.1 | + | 16009 | 0.68 | 0.400922 |
Target: 5'- uCGgGGCCCaGGCCCCaGaguccaGAGGuCAGGg -3' miRNA: 3'- uGCgCCGGGgCCGGGG-Cg-----CUCU-GUCC- -5' |
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33361 | 3' | -66.1 | NC_007605.1 | + | 34423 | 0.68 | 0.400922 |
Target: 5'- uCGgGGCCCaGGCCCCaGaguccaGAGGuCAGGg -3' miRNA: 3'- uGCgCCGGGgCCGGGG-Cg-----CUCU-GUCC- -5' |
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33361 | 3' | -66.1 | NC_007605.1 | + | 12941 | 0.68 | 0.400922 |
Target: 5'- uCGgGGCCCaGGCCCCaGaguccaGAGGuCAGGg -3' miRNA: 3'- uGCgCCGGGgCCGGGG-Cg-----CUCU-GUCC- -5' |
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33361 | 3' | -66.1 | NC_007605.1 | + | 161942 | 0.68 | 0.397788 |
Target: 5'- aGCGCGGaggaguacucugaCCUGGCCCUcuuuGUG-GACGGGg -3' miRNA: 3'- -UGCGCCg------------GGGCCGGGG----CGCuCUGUCC- -5' |
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33361 | 3' | -66.1 | NC_007605.1 | + | 48961 | 0.68 | 0.393116 |
Target: 5'- cAUGCGGCCggUGGUCCUGCGGGGggugacgguCAGGc -3' miRNA: 3'- -UGCGCCGGg-GCCGGGGCGCUCU---------GUCC- -5' |
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33361 | 3' | -66.1 | NC_007605.1 | + | 11081 | 0.68 | 0.393116 |
Target: 5'- gACGCagGGCUCgcaaaguauagUGGCCCCGUGGGACcuuagAGGu -3' miRNA: 3'- -UGCG--CCGGG-----------GCCGGGGCGCUCUG-----UCC- -5' |
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33361 | 3' | -66.1 | NC_007605.1 | + | 162848 | 0.68 | 0.377804 |
Target: 5'- -gGgGGCCCgGGCUCCuacaaCGAGACGGa -3' miRNA: 3'- ugCgCCGGGgCCGGGGc----GCUCUGUCc -5' |
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33361 | 3' | -66.1 | NC_007605.1 | + | 61500 | 0.69 | 0.3703 |
Target: 5'- --aCGGCCUCGGCCuCCGCcc-GCAGGu -3' miRNA: 3'- ugcGCCGGGGCCGG-GGCGcucUGUCC- -5' |
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33361 | 3' | -66.1 | NC_007605.1 | + | 169658 | 0.69 | 0.3703 |
Target: 5'- uGCGCGGCCCCccauGCCCCaGCaAGccGCAGc -3' miRNA: 3'- -UGCGCCGGGGc---CGGGG-CGcUC--UGUCc -5' |
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33361 | 3' | -66.1 | NC_007605.1 | + | 120028 | 0.69 | 0.362898 |
Target: 5'- ---aGGCUCCGGCCCCaCGAccucgggaggGACGGGc -3' miRNA: 3'- ugcgCCGGGGCCGGGGcGCU----------CUGUCC- -5' |
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33361 | 3' | -66.1 | NC_007605.1 | + | 157632 | 0.69 | 0.358506 |
Target: 5'- cCGCGGCCCgCGGgagcacccCCgCCGCcguucugaggcgucgGAGGCGGGa -3' miRNA: 3'- uGCGCCGGG-GCC--------GG-GGCG---------------CUCUGUCC- -5' |
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33361 | 3' | -66.1 | NC_007605.1 | + | 161283 | 0.69 | 0.355599 |
Target: 5'- uGCGCaGCCCa-GCCCCGgGGGccugcaGCAGGu -3' miRNA: 3'- -UGCGcCGGGgcCGGGGCgCUC------UGUCC- -5' |
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33361 | 3' | -66.1 | NC_007605.1 | + | 63061 | 0.69 | 0.355599 |
Target: 5'- cGCGCagGGCUgCUGGCCCCGgGGGAgguggcggucgcCGGGg -3' miRNA: 3'- -UGCG--CCGG-GGCCGGGGCgCUCU------------GUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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