miRNA display CGI


Results 1 - 20 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33361 3' -66.1 NC_007605.1 + 10573 0.66 0.528634
Target:  5'- cCG-GGCCCaGGCCuuGCaGGGCAGa -3'
miRNA:   3'- uGCgCCGGGgCCGGggCGcUCUGUCc -5'
33361 3' -66.1 NC_007605.1 + 11081 0.68 0.393116
Target:  5'- gACGCagGGCUCgcaaaguauagUGGCCCCGUGGGACcuuagAGGu -3'
miRNA:   3'- -UGCG--CCGGG-----------GCCGGGGCGCUCUG-----UCC- -5'
33361 3' -66.1 NC_007605.1 + 12399 0.68 0.424921
Target:  5'- -aGCuGGCCCCgaggaGGCgCCCG-GAGugGGGc -3'
miRNA:   3'- ugCG-CCGGGG-----CCG-GGGCgCUCugUCC- -5'
33361 3' -66.1 NC_007605.1 + 12751 0.66 0.501693
Target:  5'- gAC-CGGCCCCGcGCCUgGCGccuccuCGGGg -3'
miRNA:   3'- -UGcGCCGGGGC-CGGGgCGCucu---GUCC- -5'
33361 3' -66.1 NC_007605.1 + 12941 0.68 0.400922
Target:  5'- uCGgGGCCCaGGCCCCaGaguccaGAGGuCAGGg -3'
miRNA:   3'- uGCgCCGGGgCCGGGG-Cg-----CUCU-GUCC- -5'
33361 3' -66.1 NC_007605.1 + 14572 0.67 0.449757
Target:  5'- aACcCGGCCCgGGCCCCcCGGuauCGGGc -3'
miRNA:   3'- -UGcGCCGGGgCCGGGGcGCUcu-GUCC- -5'
33361 3' -66.1 NC_007605.1 + 15468 0.68 0.424921
Target:  5'- -aGCuGGCCCCgaggaGGCgCCCG-GAGugGGGc -3'
miRNA:   3'- ugCG-CCGGGG-----CCG-GGGCgCUCugUCC- -5'
33361 3' -66.1 NC_007605.1 + 15820 0.66 0.501693
Target:  5'- gAC-CGGCCCCGcGCCUgGCGccuccuCGGGg -3'
miRNA:   3'- -UGcGCCGGGGC-CGGGgCGCucu---GUCC- -5'
33361 3' -66.1 NC_007605.1 + 16009 0.68 0.400922
Target:  5'- uCGgGGCCCaGGCCCCaGaguccaGAGGuCAGGg -3'
miRNA:   3'- uGCgCCGGGgCCGGGG-Cg-----CUCU-GUCC- -5'
33361 3' -66.1 NC_007605.1 + 17641 0.67 0.449757
Target:  5'- aACcCGGCCCgGGCCCCcCGGuauCGGGc -3'
miRNA:   3'- -UGcGCCGGGgCCGGGGcGCUcu-GUCC- -5'
33361 3' -66.1 NC_007605.1 + 18537 0.68 0.424921
Target:  5'- -aGCuGGCCCCgaggaGGCgCCCG-GAGugGGGc -3'
miRNA:   3'- ugCG-CCGGGG-----CCG-GGGCgCUCugUCC- -5'
33361 3' -66.1 NC_007605.1 + 18889 0.66 0.501693
Target:  5'- gAC-CGGCCCCGcGCCUgGCGccuccuCGGGg -3'
miRNA:   3'- -UGcGCCGGGGC-CGGGgCGCucu---GUCC- -5'
33361 3' -66.1 NC_007605.1 + 19078 0.68 0.400922
Target:  5'- uCGgGGCCCaGGCCCCaGaguccaGAGGuCAGGg -3'
miRNA:   3'- uGCgCCGGGgCCGGGG-Cg-----CUCU-GUCC- -5'
33361 3' -66.1 NC_007605.1 + 20710 0.67 0.449757
Target:  5'- aACcCGGCCCgGGCCCCcCGGuauCGGGc -3'
miRNA:   3'- -UGcGCCGGGgCCGGGGcGCUcu-GUCC- -5'
33361 3' -66.1 NC_007605.1 + 21606 0.68 0.424921
Target:  5'- -aGCuGGCCCCgaggaGGCgCCCG-GAGugGGGc -3'
miRNA:   3'- ugCG-CCGGGG-----CCG-GGGCgCUCugUCC- -5'
33361 3' -66.1 NC_007605.1 + 21954 0.67 0.475372
Target:  5'- aGCGacCGGCCCCGcGCCUgGCGccuccuCGGGg -3'
miRNA:   3'- -UGC--GCCGGGGC-CGGGgCGCucu---GUCC- -5'
33361 3' -66.1 NC_007605.1 + 22147 0.68 0.400922
Target:  5'- uCGgGGCCCaGGCCCCaGaguccaGAGGuCAGGg -3'
miRNA:   3'- uGCgCCGGGgCCGGGG-Cg-----CUCU-GUCC- -5'
33361 3' -66.1 NC_007605.1 + 23779 0.67 0.449757
Target:  5'- aACcCGGCCCgGGCCCCcCGGuauCGGGc -3'
miRNA:   3'- -UGcGCCGGGgCCGGGGcGCUcu-GUCC- -5'
33361 3' -66.1 NC_007605.1 + 24675 0.68 0.424921
Target:  5'- -aGCuGGCCCCgaggaGGCgCCCG-GAGugGGGc -3'
miRNA:   3'- ugCG-CCGGGG-----CCG-GGGCgCUCugUCC- -5'
33361 3' -66.1 NC_007605.1 + 25026 0.66 0.501693
Target:  5'- gAC-CGGCCCCGcGCCUgGCGccuccuCGGGg -3'
miRNA:   3'- -UGcGCCGGGGC-CGGGgCGCucu---GUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.