miRNA display CGI


Results 41 - 60 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33361 3' -66.1 NC_007605.1 + 39192 0.68 0.424921
Target:  5'- cCGCugGGCCgCuGCCCCGCuccGGGugGGGg -3'
miRNA:   3'- uGCG--CCGGgGcCGGGGCG---CUCugUCC- -5'
33361 3' -66.1 NC_007605.1 + 39317 0.68 0.424921
Target:  5'- cCGCugGGCCgCuGCCCCGCuccGGGugGGGg -3'
miRNA:   3'- uGCG--CCGGgGcCGGGGCG---CUCugUCC- -5'
33361 3' -66.1 NC_007605.1 + 39442 0.68 0.424921
Target:  5'- cCGCugGGCCgCuGCCCCGCuccGGGugGGGg -3'
miRNA:   3'- uGCG--CCGGgGcCGGGGCG---CUCugUCC- -5'
33361 3' -66.1 NC_007605.1 + 39567 0.68 0.424921
Target:  5'- cCGCugGGCCgCuGCCCCGCuccGGGugGGGg -3'
miRNA:   3'- uGCG--CCGGgGcCGGGGCG---CUCugUCC- -5'
33361 3' -66.1 NC_007605.1 + 39692 0.68 0.424921
Target:  5'- cCGCugGGCCgCuGCCCCGCuccGGGugGGGg -3'
miRNA:   3'- uGCG--CCGGgGcCGGGGCG---CUCugUCC- -5'
33361 3' -66.1 NC_007605.1 + 40186 0.78 0.094806
Target:  5'- gGCGUGGUCCUGGgaCCCCGCGccgacuGGCAGGg -3'
miRNA:   3'- -UGCGCCGGGGCC--GGGGCGCu-----CUGUCC- -5'
33361 3' -66.1 NC_007605.1 + 40258 0.72 0.2214
Target:  5'- cCGCGGCCCagCGcGCCCCGUucacGGGGgAGGa -3'
miRNA:   3'- uGCGCCGGG--GC-CGGGGCG----CUCUgUCC- -5'
33361 3' -66.1 NC_007605.1 + 40292 0.71 0.258703
Target:  5'- cCGCGGCCgagCCaccaggGGCCCgGCGGGGguGGg -3'
miRNA:   3'- uGCGCCGG---GG------CCGGGgCGCUCUguCC- -5'
33361 3' -66.1 NC_007605.1 + 40468 0.67 0.466751
Target:  5'- cCGCGGUCCUc-CCCCGUGA-ACGGGg -3'
miRNA:   3'- uGCGCCGGGGccGGGGCGCUcUGUCC- -5'
33361 3' -66.1 NC_007605.1 + 45277 0.69 0.341315
Target:  5'- -gGUGG-CCUGGCCCCcCGAG-CAGGu -3'
miRNA:   3'- ugCGCCgGGGCCGGGGcGCUCuGUCC- -5'
33361 3' -66.1 NC_007605.1 + 47067 0.66 0.51061
Target:  5'- cCGCcaacGCCCagaaGGCCUCGCGGGuCAuGGa -3'
miRNA:   3'- uGCGc---CGGGg---CCGGGGCGCUCuGU-CC- -5'
33361 3' -66.1 NC_007605.1 + 48961 0.68 0.393116
Target:  5'- cAUGCGGCCggUGGUCCUGCGGGGggugacgguCAGGc -3'
miRNA:   3'- -UGCGCCGGg-GCCGGGGCGCUCU---------GUCC- -5'
33361 3' -66.1 NC_007605.1 + 49693 0.71 0.281631
Target:  5'- gGCGCugaugaugccaaGGCCCCGGUCCCagcggaugcgGCGgccugagccugcuGGACGGGg -3'
miRNA:   3'- -UGCG------------CCGGGGCCGGGG----------CGC-------------UCUGUCC- -5'
33361 3' -66.1 NC_007605.1 + 49805 0.67 0.441389
Target:  5'- uUGCGGCgaagCUGGCUCacgaaGCGAGACAGu -3'
miRNA:   3'- uGCGCCGg---GGCCGGGg----CGCUCUGUCc -5'
33361 3' -66.1 NC_007605.1 + 50356 0.67 0.458212
Target:  5'- gGCGgGGCCgCGGugggcugcCCCCGa-GGACGGGc -3'
miRNA:   3'- -UGCgCCGGgGCC--------GGGGCgcUCUGUCC- -5'
33361 3' -66.1 NC_007605.1 + 50577 0.66 0.537735
Target:  5'- gGCGCuGGCggCCGGCgCCCGUccucgGGGGCAGc -3'
miRNA:   3'- -UGCG-CCGg-GGCCG-GGGCG-----CUCUGUCc -5'
33361 3' -66.1 NC_007605.1 + 50664 0.66 0.528634
Target:  5'- uCGCaGCCCgaCGGCCgUgGgGAGGCGGGu -3'
miRNA:   3'- uGCGcCGGG--GCCGG-GgCgCUCUGUCC- -5'
33361 3' -66.1 NC_007605.1 + 51707 0.73 0.211617
Target:  5'- -gGCGGCCCUGGCCUCgGUGAGAa--- -3'
miRNA:   3'- ugCGCCGGGGCCGGGG-CGCUCUgucc -5'
33361 3' -66.1 NC_007605.1 + 54629 0.67 0.458212
Target:  5'- -gGCGGCCgaugccauccguUCGGCCCuCGCGcAGACGc- -3'
miRNA:   3'- ugCGCCGG------------GGCCGGG-GCGC-UCUGUcc -5'
33361 3' -66.1 NC_007605.1 + 56120 0.68 0.408826
Target:  5'- -aGCGGuaucCCCUGGCCCCuggaGCGAGuugAGGa -3'
miRNA:   3'- ugCGCC----GGGGCCGGGG----CGCUCug-UCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.