miRNA display CGI


Results 61 - 80 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33361 3' -66.1 NC_007605.1 + 58238 0.66 0.51061
Target:  5'- cCGCGGCCCCGGCCuCCaGCc------- -3'
miRNA:   3'- uGCGCCGGGGCCGG-GG-CGcucugucc -5'
33361 3' -66.1 NC_007605.1 + 58268 0.78 0.088118
Target:  5'- cCGCGGCCCCGGCCuCCGCGGcccCGGc -3'
miRNA:   3'- uGCGCCGGGGCCGG-GGCGCUcu-GUCc -5'
33361 3' -66.1 NC_007605.1 + 58298 0.78 0.088118
Target:  5'- cCGCGGCCCCGGCCuCCGCGGcccCGGc -3'
miRNA:   3'- uGCGCCGGGGCCGG-GGCGCUcu-GUCc -5'
33361 3' -66.1 NC_007605.1 + 58343 0.73 0.197642
Target:  5'- cUGCGGCCCCGGCCuCUGCGGcccCGGc -3'
miRNA:   3'- uGCGCCGGGGCCGG-GGCGCUcu-GUCc -5'
33361 3' -66.1 NC_007605.1 + 58758 0.73 0.206866
Target:  5'- gAUGCGGCCCCGGgcacCCCCGCccaugucaGAGuCAGc -3'
miRNA:   3'- -UGCGCCGGGGCC----GGGGCG--------CUCuGUCc -5'
33361 3' -66.1 NC_007605.1 + 59316 0.67 0.433109
Target:  5'- cCGgGGaaCCGGCCCCGUGcgcGGAauCAGGa -3'
miRNA:   3'- uGCgCCggGGCCGGGGCGC---UCU--GUCC- -5'
33361 3' -66.1 NC_007605.1 + 60439 0.66 0.501693
Target:  5'- gGCGCcuccuGGUgCCGGCCCUcaGgGAGAgcCGGGg -3'
miRNA:   3'- -UGCG-----CCGgGGCCGGGG--CgCUCU--GUCC- -5'
33361 3' -66.1 NC_007605.1 + 61367 0.73 0.206866
Target:  5'- -gGUGGCggCGGCCCCGCG-GACAGa -3'
miRNA:   3'- ugCGCCGggGCCGGGGCGCuCUGUCc -5'
33361 3' -66.1 NC_007605.1 + 61452 0.66 0.51061
Target:  5'- -gGCaGGCCCCGGCCCCgGCuccGGCc-- -3'
miRNA:   3'- ugCG-CCGGGGCCGGGG-CGcu-CUGucc -5'
33361 3' -66.1 NC_007605.1 + 61500 0.69 0.3703
Target:  5'- --aCGGCCUCGGCCuCCGCcc-GCAGGu -3'
miRNA:   3'- ugcGCCGGGGCCGG-GGCGcucUGUCC- -5'
33361 3' -66.1 NC_007605.1 + 61628 0.7 0.300344
Target:  5'- -gGUGGCCUCGaGCCaccuccaCCGCGAG-CGGGa -3'
miRNA:   3'- ugCGCCGGGGC-CGG-------GGCGCUCuGUCC- -5'
33361 3' -66.1 NC_007605.1 + 61713 0.67 0.475372
Target:  5'- gUGUGGCCCgGGCggccuaCCUGCG-GGCGGa -3'
miRNA:   3'- uGCGCCGGGgCCG------GGGCGCuCUGUCc -5'
33361 3' -66.1 NC_007605.1 + 62232 0.7 0.288383
Target:  5'- uCGCuGCCCCuGGCCCgGCGgcGGGCGGu -3'
miRNA:   3'- uGCGcCGGGG-CCGGGgCGC--UCUGUCc -5'
33361 3' -66.1 NC_007605.1 + 62524 0.66 0.51689
Target:  5'- -gGUGGCCgacacuuaucuggcCCGGUgggacgccuuCCCGCGGGAgGGGc -3'
miRNA:   3'- ugCGCCGG--------------GGCCG----------GGGCGCUCUgUCC- -5'
33361 3' -66.1 NC_007605.1 + 63061 0.69 0.355599
Target:  5'- cGCGCagGGCUgCUGGCCCCGgGGGAgguggcggucgcCGGGg -3'
miRNA:   3'- -UGCG--CCGG-GGCCGGGGCgCUCU------------GUCC- -5'
33361 3' -66.1 NC_007605.1 + 64645 0.66 0.51061
Target:  5'- -gGCuGCCCUGaGaCCCGCGuagAGGCAGGu -3'
miRNA:   3'- ugCGcCGGGGC-CgGGGCGC---UCUGUCC- -5'
33361 3' -66.1 NC_007605.1 + 66207 0.69 0.355599
Target:  5'- aGCGCuGCCgCaGaGCCuCCGgGAGGCAGGa -3'
miRNA:   3'- -UGCGcCGGgG-C-CGG-GGCgCUCUGUCC- -5'
33361 3' -66.1 NC_007605.1 + 66279 0.7 0.294631
Target:  5'- aGCGCGGCUcugUCGGUgCCGCGGGAggaaCAGa -3'
miRNA:   3'- -UGCGCCGG---GGCCGgGGCGCUCU----GUCc -5'
33361 3' -66.1 NC_007605.1 + 67237 0.69 0.334329
Target:  5'- cAUuaGGCCCCGGaCCCGC-AG-CAGGg -3'
miRNA:   3'- -UGcgCCGGGGCCgGGGCGcUCuGUCC- -5'
33361 3' -66.1 NC_007605.1 + 81491 0.66 0.536822
Target:  5'- --cCGGCCCUGGgagccauCCCUgacacaggcuGCGGGGCAGGc -3'
miRNA:   3'- ugcGCCGGGGCC-------GGGG----------CGCUCUGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.