miRNA display CGI


Results 21 - 40 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33361 3' -66.1 NC_007605.1 + 160196 0.77 0.10703
Target:  5'- gGCGCGGUCCCGGgCCCGgGGcGGCcGGa -3'
miRNA:   3'- -UGCGCCGGGGCCgGGGCgCU-CUGuCC- -5'
33361 3' -66.1 NC_007605.1 + 159990 0.67 0.466751
Target:  5'- uCGCcuGGCCCUGGUgcggggggCCUGCGAGgaggcgcugGCGGGg -3'
miRNA:   3'- uGCG--CCGGGGCCG--------GGGCGCUC---------UGUCC- -5'
33361 3' -66.1 NC_007605.1 + 159728 0.67 0.475372
Target:  5'- cCGUGGCCCCGggaGCCaCgGCGucaaACAGGu -3'
miRNA:   3'- uGCGCCGGGGC---CGG-GgCGCuc--UGUCC- -5'
33361 3' -66.1 NC_007605.1 + 159276 0.7 0.300984
Target:  5'- aACGUGGCCCUGGCUcgcugCUGUGAcgccGCAGGu -3'
miRNA:   3'- -UGCGCCGGGGCCGG-----GGCGCUc---UGUCC- -5'
33361 3' -66.1 NC_007605.1 + 159024 0.67 0.449757
Target:  5'- gACGCGgucaGCCCCggccaGGCCCUGCccccGGAUGGGc -3'
miRNA:   3'- -UGCGC----CGGGG-----CCGGGGCGc---UCUGUCC- -5'
33361 3' -66.1 NC_007605.1 + 157632 0.69 0.358506
Target:  5'- cCGCGGCCCgCGGgagcacccCCgCCGCcguucugaggcgucgGAGGCGGGa -3'
miRNA:   3'- uGCGCCGGG-GCC--------GG-GGCG---------------CUCUGUCC- -5'
33361 3' -66.1 NC_007605.1 + 157442 0.66 0.537735
Target:  5'- uGCGCGGgCCUGGUgCCUGgagcagaaGAGGCAGa -3'
miRNA:   3'- -UGCGCCgGGGCCG-GGGCg-------CUCUGUCc -5'
33361 3' -66.1 NC_007605.1 + 155333 0.66 0.519591
Target:  5'- gGCGUacGaGUCCCGGUgCUG-GAGGCGGGg -3'
miRNA:   3'- -UGCG--C-CGGGGCCGgGGCgCUCUGUCC- -5'
33361 3' -66.1 NC_007605.1 + 154144 0.66 0.492846
Target:  5'- uCGUggaGGCCCUGaGCCCCGCcaaccuGCAGGc -3'
miRNA:   3'- uGCG---CCGGGGC-CGGGGCGcuc---UGUCC- -5'
33361 3' -66.1 NC_007605.1 + 153997 0.68 0.416826
Target:  5'- gUGCGGCCCUGcagcGUCaCCGUcucggcgauggaGAGGCAGGg -3'
miRNA:   3'- uGCGCCGGGGC----CGG-GGCG------------CUCUGUCC- -5'
33361 3' -66.1 NC_007605.1 + 151398 0.66 0.501693
Target:  5'- --aCGGCCagGGCCUCGUaggccGAGACGGGc -3'
miRNA:   3'- ugcGCCGGggCCGGGGCG-----CUCUGUCC- -5'
33361 3' -66.1 NC_007605.1 + 151035 0.67 0.484071
Target:  5'- aGCG-GGCCCaugaaGGCCCgggggcugGCGAGGCGGc -3'
miRNA:   3'- -UGCgCCGGGg----CCGGGg-------CGCUCUGUCc -5'
33361 3' -66.1 NC_007605.1 + 150948 0.71 0.258703
Target:  5'- gGCGCGGCCUCGGCUgggaCaCGGGACGuGGu -3'
miRNA:   3'- -UGCGCCGGGGCCGGg---GcGCUCUGU-CC- -5'
33361 3' -66.1 NC_007605.1 + 143058 0.69 0.341315
Target:  5'- cCGgGGUUCCGGCCCUG-GAGcuCGGGg -3'
miRNA:   3'- uGCgCCGGGGCCGGGGCgCUCu-GUCC- -5'
33361 3' -66.1 NC_007605.1 + 142956 0.69 0.341315
Target:  5'- cCGgGGUUCCGGCCCUG-GAGcuCGGGg -3'
miRNA:   3'- uGCgCCGGGGCCGGGGCgCUCu-GUCC- -5'
33361 3' -66.1 NC_007605.1 + 142854 0.69 0.341315
Target:  5'- cCGgGGUUCCGGCCCUG-GAGcuCGGGg -3'
miRNA:   3'- uGCgCCGGGGCCGGGGCgCUCu-GUCC- -5'
33361 3' -66.1 NC_007605.1 + 142752 0.69 0.341315
Target:  5'- cCGgGGUUCCGGCCCUG-GAGcuCGGGg -3'
miRNA:   3'- uGCgCCGGGGCCGGGGCgCUCu-GUCC- -5'
33361 3' -66.1 NC_007605.1 + 142651 0.69 0.341315
Target:  5'- cCGgGGUUCCGGCCCUG-GAGcuCGGGg -3'
miRNA:   3'- uGCgCCGGGGCCGGGGCgCUCu-GUCC- -5'
33361 3' -66.1 NC_007605.1 + 142549 0.69 0.341315
Target:  5'- cCGgGGUUCCGGCCCUG-GAGcuCGGGg -3'
miRNA:   3'- uGCgCCGGGGCCGGGGCgCUCu-GUCC- -5'
33361 3' -66.1 NC_007605.1 + 142447 0.69 0.341315
Target:  5'- cCGgGGUUCCGGCCCUG-GAGcuCGGGg -3'
miRNA:   3'- uGCgCCGGGGCCGGGGCgCUCu-GUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.