miRNA display CGI


Results 41 - 60 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33361 3' -66.1 NC_007605.1 + 142345 0.69 0.341315
Target:  5'- cCGgGGUUCCGGCCCUG-GAGcuCGGGg -3'
miRNA:   3'- uGCgCCGGGGCCGGGGCgCUCu-GUCC- -5'
33361 3' -66.1 NC_007605.1 + 142243 0.69 0.341315
Target:  5'- cCGgGGUUCCGGCCCUG-GAGcuCGGGg -3'
miRNA:   3'- uGCgCCGGGGCCGGGGCgCUCu-GUCC- -5'
33361 3' -66.1 NC_007605.1 + 142141 0.69 0.341315
Target:  5'- cCGgGGUUCCGGCCCUG-GAGcuCGGGg -3'
miRNA:   3'- uGCgCCGGGGCCGGGGCgCUCu-GUCC- -5'
33361 3' -66.1 NC_007605.1 + 142039 0.69 0.341315
Target:  5'- cCGgGGUUCCGGCCCUG-GAGcuCGGGg -3'
miRNA:   3'- uGCgCCGGGGCCGGGGCgCUCu-GUCC- -5'
33361 3' -66.1 NC_007605.1 + 141937 0.69 0.341315
Target:  5'- cCGgGGUUCCGGCCCUG-GAGcuCGGGg -3'
miRNA:   3'- uGCgCCGGGGCCGGGGCgCUCu-GUCC- -5'
33361 3' -66.1 NC_007605.1 + 141835 0.69 0.341315
Target:  5'- cCGgGGUUCCGGCCCUG-GAGcuCGGGg -3'
miRNA:   3'- uGCgCCGGGGCCGGGGCgCUCu-GUCC- -5'
33361 3' -66.1 NC_007605.1 + 141733 0.69 0.341315
Target:  5'- cCGgGGUUCCGGCCCUG-GAGcuCGGGg -3'
miRNA:   3'- uGCgCCGGGGCCGGGGCgCUCu-GUCC- -5'
33361 3' -66.1 NC_007605.1 + 141632 0.69 0.341315
Target:  5'- cCGgGGUUCCGGCCCUG-GAGcuCGGGg -3'
miRNA:   3'- uGCgCCGGGGCCGGGGCgCUCu-GUCC- -5'
33361 3' -66.1 NC_007605.1 + 141530 0.69 0.341315
Target:  5'- cCGgGGUUCCGGCCCUG-GAGcuCGGGg -3'
miRNA:   3'- uGCgCCGGGGCCGGGGCgCUCu-GUCC- -5'
33361 3' -66.1 NC_007605.1 + 141428 0.69 0.341315
Target:  5'- cCGgGGUUCCGGCCCUG-GAGcuCGGGg -3'
miRNA:   3'- uGCgCCGGGGCCGGGGCgCUCu-GUCC- -5'
33361 3' -66.1 NC_007605.1 + 141326 0.69 0.341315
Target:  5'- cCGgGGUUCCGGCCCUG-GAGcuCGGGg -3'
miRNA:   3'- uGCgCCGGGGCCGGGGCgCUCu-GUCC- -5'
33361 3' -66.1 NC_007605.1 + 141224 0.69 0.341315
Target:  5'- cCGgGGUUCCGGCCCUG-GAGcuCGGGg -3'
miRNA:   3'- uGCgCCGGGGCCGGGGCgCUCu-GUCC- -5'
33361 3' -66.1 NC_007605.1 + 141122 0.69 0.341315
Target:  5'- cCGgGGUUCCGGCCCUG-GAGcuCGGGg -3'
miRNA:   3'- uGCgCCGGGGCCGGGGCgCUCu-GUCC- -5'
33361 3' -66.1 NC_007605.1 + 141020 0.69 0.341315
Target:  5'- cCGgGGUUCCGGCCCUG-GAGcuCGGGg -3'
miRNA:   3'- uGCgCCGGGGCCGGGGCgCUCu-GUCC- -5'
33361 3' -66.1 NC_007605.1 + 140918 0.69 0.341315
Target:  5'- cCGgGGUUCCGGCCCUG-GAGcuCGGGg -3'
miRNA:   3'- uGCgCCGGGGCCGGGGCgCUCu-GUCC- -5'
33361 3' -66.1 NC_007605.1 + 140816 0.69 0.341315
Target:  5'- cCGgGGUUCCGGCCCUG-GAGcuCGGGg -3'
miRNA:   3'- uGCgCCGGGGCCGGGGCgCUCu-GUCC- -5'
33361 3' -66.1 NC_007605.1 + 136317 0.7 0.288383
Target:  5'- cUGCGGaggUUCGGCCgCCGCGGGcCAGGa -3'
miRNA:   3'- uGCGCCg--GGGCCGG-GGCGCUCuGUCC- -5'
33361 3' -66.1 NC_007605.1 + 133962 0.66 0.51869
Target:  5'- cCG-GGCCCa-GCuccagcagcucuuCCCGUGAGGCAGGg -3'
miRNA:   3'- uGCgCCGGGgcCG-------------GGGCGCUCUGUCC- -5'
33361 3' -66.1 NC_007605.1 + 126175 0.68 0.408826
Target:  5'- cCGgGGgCCCGGCCCggccaagaGCGaAGACgAGGa -3'
miRNA:   3'- uGCgCCgGGGCCGGGg-------CGC-UCUG-UCC- -5'
33361 3' -66.1 NC_007605.1 + 124747 0.67 0.475372
Target:  5'- cCGUGGCCUCGGCCCUacaguuugggGUcgaugcccugGAGAgGGGc -3'
miRNA:   3'- uGCGCCGGGGCCGGGG----------CG----------CUCUgUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.