miRNA display CGI


Results 61 - 80 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33361 3' -66.1 NC_007605.1 + 123804 1.08 0.000627
Target:  5'- aACGCGGCCCCGGCCCCGCGAGACAGGc -3'
miRNA:   3'- -UGCGCCGGGGCCGGGGCGCUCUGUCC- -5'
33361 3' -66.1 NC_007605.1 + 120028 0.69 0.362898
Target:  5'- ---aGGCUCCGGCCCCaCGAccucgggaggGACGGGc -3'
miRNA:   3'- ugcgCCGGGGCCGGGGcGCU----------CUGUCC- -5'
33361 3' -66.1 NC_007605.1 + 119752 0.66 0.501693
Target:  5'- gUGUGGCUcggcucagguuCCGGCCCUGgGAcGGCAGc -3'
miRNA:   3'- uGCGCCGG-----------GGCCGGGGCgCU-CUGUCc -5'
33361 3' -66.1 NC_007605.1 + 115467 0.67 0.433109
Target:  5'- cCGCGGCCaCCGGCauaugcucuauaCCCGCcccuccggGGGGCccAGGa -3'
miRNA:   3'- uGCGCCGG-GGCCG------------GGGCG--------CUCUG--UCC- -5'
33361 3' -66.1 NC_007605.1 + 115325 0.67 0.484071
Target:  5'- --uCGGCCCCGGCCCUaaGUcuGAGcccCAGGc -3'
miRNA:   3'- ugcGCCGGGGCCGGGG--CG--CUCu--GUCC- -5'
33361 3' -66.1 NC_007605.1 + 104737 0.66 0.492846
Target:  5'- aGCGCG--CCCGGCCCCcuGCcAGACGGc -3'
miRNA:   3'- -UGCGCcgGGGCCGGGG--CGcUCUGUCc -5'
33361 3' -66.1 NC_007605.1 + 102645 0.66 0.519591
Target:  5'- aACaCGGCCCCucucaaGGCCaUCGUGGGccACGGGg -3'
miRNA:   3'- -UGcGCCGGGG------CCGG-GGCGCUC--UGUCC- -5'
33361 3' -66.1 NC_007605.1 + 101163 0.71 0.28224
Target:  5'- aAUGCGGCCCCGGCggua-GAGugGGGu -3'
miRNA:   3'- -UGCGCCGGGGCCGgggcgCUCugUCC- -5'
33361 3' -66.1 NC_007605.1 + 101046 0.67 0.441389
Target:  5'- -gGCGGCCauaaUGGaCCCCGCGcaguacguGGGCuGGa -3'
miRNA:   3'- ugCGCCGGg---GCC-GGGGCGC--------UCUGuCC- -5'
33361 3' -66.1 NC_007605.1 + 99755 0.67 0.448916
Target:  5'- gGCGCuGUCCCGGgCCCggcacucuaauuGCGuggucauGGACAGGa -3'
miRNA:   3'- -UGCGcCGGGGCCgGGG------------CGC-------UCUGUCC- -5'
33361 3' -66.1 NC_007605.1 + 99161 0.72 0.216461
Target:  5'- cCGaGGCCgCCGGCuCCCGCGccggucaggGGACGGGc -3'
miRNA:   3'- uGCgCCGG-GGCCG-GGGCGC---------UCUGUCC- -5'
33361 3' -66.1 NC_007605.1 + 92491 0.68 0.416826
Target:  5'- cGCGCGGCCaucaUGGCCUC-CGGcaaGCAGGu -3'
miRNA:   3'- -UGCGCCGGg---GCCGGGGcGCUc--UGUCC- -5'
33361 3' -66.1 NC_007605.1 + 91938 0.67 0.466751
Target:  5'- -gGCcagGGCCgaGGCCCCGCGccuGCGGGc -3'
miRNA:   3'- ugCG---CCGGggCCGGGGCGCuc-UGUCC- -5'
33361 3' -66.1 NC_007605.1 + 88031 0.76 0.132831
Target:  5'- uGCGaGGCCCCgcggcaggaGGCCCCGCGGcaggaggcccgcGGCAGGa -3'
miRNA:   3'- -UGCgCCGGGG---------CCGGGGCGCU------------CUGUCC- -5'
33361 3' -66.1 NC_007605.1 + 87978 0.74 0.171695
Target:  5'- cCGCGGCaggaGGCCCCGCGGcaggaggccccgcGGCAGGa -3'
miRNA:   3'- uGCGCCGggg-CCGGGGCGCU-------------CUGUCC- -5'
33361 3' -66.1 NC_007605.1 + 81491 0.66 0.536822
Target:  5'- --cCGGCCCUGGgagccauCCCUgacacaggcuGCGGGGCAGGc -3'
miRNA:   3'- ugcGCCGGGGCC-------GGGG----------CGCUCUGUCC- -5'
33361 3' -66.1 NC_007605.1 + 67237 0.69 0.334329
Target:  5'- cAUuaGGCCCCGGaCCCGC-AG-CAGGg -3'
miRNA:   3'- -UGcgCCGGGGCCgGGGCGcUCuGUCC- -5'
33361 3' -66.1 NC_007605.1 + 66279 0.7 0.294631
Target:  5'- aGCGCGGCUcugUCGGUgCCGCGGGAggaaCAGa -3'
miRNA:   3'- -UGCGCCGG---GGCCGgGGCGCUCU----GUCc -5'
33361 3' -66.1 NC_007605.1 + 66207 0.69 0.355599
Target:  5'- aGCGCuGCCgCaGaGCCuCCGgGAGGCAGGa -3'
miRNA:   3'- -UGCGcCGGgG-C-CGG-GGCgCUCUGUCC- -5'
33361 3' -66.1 NC_007605.1 + 64645 0.66 0.51061
Target:  5'- -gGCuGCCCUGaGaCCCGCGuagAGGCAGGu -3'
miRNA:   3'- ugCGcCGGGGC-CgGGGCGC---UCUGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.