miRNA display CGI


Results 1 - 20 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33361 3' -66.1 NC_007605.1 + 141835 0.69 0.341315
Target:  5'- cCGgGGUUCCGGCCCUG-GAGcuCGGGg -3'
miRNA:   3'- uGCgCCGGGGCCGGGGCgCUCu-GUCC- -5'
33361 3' -66.1 NC_007605.1 + 141020 0.69 0.341315
Target:  5'- cCGgGGUUCCGGCCCUG-GAGcuCGGGg -3'
miRNA:   3'- uGCgCCGGGGCCGGGGCgCUCu-GUCC- -5'
33361 3' -66.1 NC_007605.1 + 141122 0.69 0.341315
Target:  5'- cCGgGGUUCCGGCCCUG-GAGcuCGGGg -3'
miRNA:   3'- uGCgCCGGGGCCGGGGCgCUCu-GUCC- -5'
33361 3' -66.1 NC_007605.1 + 141224 0.69 0.341315
Target:  5'- cCGgGGUUCCGGCCCUG-GAGcuCGGGg -3'
miRNA:   3'- uGCgCCGGGGCCGGGGCgCUCu-GUCC- -5'
33361 3' -66.1 NC_007605.1 + 141326 0.69 0.341315
Target:  5'- cCGgGGUUCCGGCCCUG-GAGcuCGGGg -3'
miRNA:   3'- uGCgCCGGGGCCGGGGCgCUCu-GUCC- -5'
33361 3' -66.1 NC_007605.1 + 141428 0.69 0.341315
Target:  5'- cCGgGGUUCCGGCCCUG-GAGcuCGGGg -3'
miRNA:   3'- uGCgCCGGGGCCGGGGCgCUCu-GUCC- -5'
33361 3' -66.1 NC_007605.1 + 141530 0.69 0.341315
Target:  5'- cCGgGGUUCCGGCCCUG-GAGcuCGGGg -3'
miRNA:   3'- uGCgCCGGGGCCGGGGCgCUCu-GUCC- -5'
33361 3' -66.1 NC_007605.1 + 141632 0.69 0.341315
Target:  5'- cCGgGGUUCCGGCCCUG-GAGcuCGGGg -3'
miRNA:   3'- uGCgCCGGGGCCGGGGCgCUCu-GUCC- -5'
33361 3' -66.1 NC_007605.1 + 141733 0.69 0.341315
Target:  5'- cCGgGGUUCCGGCCCUG-GAGcuCGGGg -3'
miRNA:   3'- uGCgCCGGGGCCGGGGCgCUCu-GUCC- -5'
33361 3' -66.1 NC_007605.1 + 140918 0.69 0.341315
Target:  5'- cCGgGGUUCCGGCCCUG-GAGcuCGGGg -3'
miRNA:   3'- uGCgCCGGGGCCGGGGCgCUCu-GUCC- -5'
33361 3' -66.1 NC_007605.1 + 140816 0.69 0.341315
Target:  5'- cCGgGGUUCCGGCCCUG-GAGcuCGGGg -3'
miRNA:   3'- uGCgCCGGGGCCGGGGCgCUCu-GUCC- -5'
33361 3' -66.1 NC_007605.1 + 45277 0.69 0.341315
Target:  5'- -gGUGG-CCUGGCCCCcCGAG-CAGGu -3'
miRNA:   3'- ugCGCCgGGGCCGGGGcGCUCuGUCC- -5'
33361 3' -66.1 NC_007605.1 + 51707 0.73 0.211617
Target:  5'- -gGCGGCCCUGGCCUCgGUGAGAa--- -3'
miRNA:   3'- ugCGCCGGGGCCGGGG-CGCUCUgucc -5'
33361 3' -66.1 NC_007605.1 + 99161 0.72 0.216461
Target:  5'- cCGaGGCCgCCGGCuCCCGCGccggucaggGGACGGGc -3'
miRNA:   3'- uGCgCCGG-GGCCG-GGGCGC---------UCUGUCC- -5'
33361 3' -66.1 NC_007605.1 + 40258 0.72 0.2214
Target:  5'- cCGCGGCCCagCGcGCCCCGUucacGGGGgAGGa -3'
miRNA:   3'- uGCGCCGGG--GC-CGGGGCG----CUCUgUCC- -5'
33361 3' -66.1 NC_007605.1 + 40292 0.71 0.258703
Target:  5'- cCGCGGCCgagCCaccaggGGCCCgGCGGGGguGGg -3'
miRNA:   3'- uGCGCCGG---GG------CCGGGgCGCUCUguCC- -5'
33361 3' -66.1 NC_007605.1 + 101163 0.71 0.28224
Target:  5'- aAUGCGGCCCCGGCggua-GAGugGGGu -3'
miRNA:   3'- -UGCGCCGGGGCCGgggcgCUCugUCC- -5'
33361 3' -66.1 NC_007605.1 + 136317 0.7 0.288383
Target:  5'- cUGCGGaggUUCGGCCgCCGCGGGcCAGGa -3'
miRNA:   3'- uGCGCCg--GGGCCGG-GGCGCUCuGUCC- -5'
33361 3' -66.1 NC_007605.1 + 66279 0.7 0.294631
Target:  5'- aGCGCGGCUcugUCGGUgCCGCGGGAggaaCAGa -3'
miRNA:   3'- -UGCGCCGG---GGCCGgGGCGCUCU----GUCc -5'
33361 3' -66.1 NC_007605.1 + 61628 0.7 0.300344
Target:  5'- -gGUGGCCUCGaGCCaccuccaCCGCGAG-CGGGa -3'
miRNA:   3'- ugCGCCGGGGC-CGG-------GGCGCUCuGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.