miRNA display CGI


Results 1 - 20 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33361 3' -66.1 NC_007605.1 + 123804 1.08 0.000627
Target:  5'- aACGCGGCCCCGGCCCCGCGAGACAGGc -3'
miRNA:   3'- -UGCGCCGGGGCCGGGGCGCUCUGUCC- -5'
33361 3' -66.1 NC_007605.1 + 157632 0.69 0.358506
Target:  5'- cCGCGGCCCgCGGgagcacccCCgCCGCcguucugaggcgucgGAGGCGGGa -3'
miRNA:   3'- uGCGCCGGG-GCC--------GG-GGCG---------------CUCUGUCC- -5'
33361 3' -66.1 NC_007605.1 + 169658 0.69 0.3703
Target:  5'- uGCGCGGCCCCccauGCCCCaGCaAGccGCAGc -3'
miRNA:   3'- -UGCGCCGGGGc---CGGGG-CGcUC--UGUCc -5'
33361 3' -66.1 NC_007605.1 + 170838 0.66 0.537735
Target:  5'- cCGCaGcCCCCGGgCCCGCG-GACc-- -3'
miRNA:   3'- uGCGcC-GGGGCCgGGGCGCuCUGucc -5'
33361 3' -66.1 NC_007605.1 + 88031 0.76 0.132831
Target:  5'- uGCGaGGCCCCgcggcaggaGGCCCCGCGGcaggaggcccgcGGCAGGa -3'
miRNA:   3'- -UGCgCCGGGG---------CCGGGGCGCU------------CUGUCC- -5'
33361 3' -66.1 NC_007605.1 + 87978 0.74 0.171695
Target:  5'- cCGCGGCaggaGGCCCCGCGGcaggaggccccgcGGCAGGa -3'
miRNA:   3'- uGCGCCGggg-CCGGGGCGCU-------------CUGUCC- -5'
33361 3' -66.1 NC_007605.1 + 61367 0.73 0.206866
Target:  5'- -gGUGGCggCGGCCCCGCG-GACAGa -3'
miRNA:   3'- ugCGCCGggGCCGGGGCGCuCUGUCc -5'
33361 3' -66.1 NC_007605.1 + 58758 0.73 0.206866
Target:  5'- gAUGCGGCCCCGGgcacCCCCGCccaugucaGAGuCAGc -3'
miRNA:   3'- -UGCGCCGGGGCC----GGGGCG--------CUCuGUCc -5'
33361 3' -66.1 NC_007605.1 + 170718 0.7 0.288383
Target:  5'- uGCGCGGCCCCccauGCCCCaCGGGGgucuuuccUGGGg -3'
miRNA:   3'- -UGCGCCGGGGc---CGGGGcGCUCU--------GUCC- -5'
33361 3' -66.1 NC_007605.1 + 66207 0.69 0.355599
Target:  5'- aGCGCuGCCgCaGaGCCuCCGgGAGGCAGGa -3'
miRNA:   3'- -UGCGcCGGgG-C-CGG-GGCgCUCUGUCC- -5'
33361 3' -66.1 NC_007605.1 + 159276 0.7 0.300984
Target:  5'- aACGUGGCCCUGGCUcgcugCUGUGAcgccGCAGGu -3'
miRNA:   3'- -UGCGCCGGGGCCGG-----GGCGCUc---UGUCC- -5'
33361 3' -66.1 NC_007605.1 + 49693 0.71 0.281631
Target:  5'- gGCGCugaugaugccaaGGCCCCGGUCCCagcggaugcgGCGgccugagccugcuGGACGGGg -3'
miRNA:   3'- -UGCG------------CCGGGGCCGGGG----------CGC-------------UCUGUCC- -5'
33361 3' -66.1 NC_007605.1 + 58298 0.78 0.088118
Target:  5'- cCGCGGCCCCGGCCuCCGCGGcccCGGc -3'
miRNA:   3'- uGCGCCGGGGCCGG-GGCGCUcu-GUCc -5'
33361 3' -66.1 NC_007605.1 + 161064 0.7 0.307442
Target:  5'- aGCGUGGCCgagCCGGUCagcaCCGCGucGCAGGc -3'
miRNA:   3'- -UGCGCCGG---GGCCGG----GGCGCucUGUCC- -5'
33361 3' -66.1 NC_007605.1 + 58268 0.78 0.088118
Target:  5'- cCGCGGCCCCGGCCuCCGCGGcccCGGc -3'
miRNA:   3'- uGCGCCGGGGCCGG-GGCGCUcu-GUCc -5'
33361 3' -66.1 NC_007605.1 + 150948 0.71 0.258703
Target:  5'- gGCGCGGCCUCGGCUgggaCaCGGGACGuGGu -3'
miRNA:   3'- -UGCGCCGGGGCCGGg---GcGCUCUGU-CC- -5'
33361 3' -66.1 NC_007605.1 + 67237 0.69 0.334329
Target:  5'- cAUuaGGCCCCGGaCCCGC-AG-CAGGg -3'
miRNA:   3'- -UGcgCCGGGGCCgGGGCGcUCuGUCC- -5'
33361 3' -66.1 NC_007605.1 + 120028 0.69 0.362898
Target:  5'- ---aGGCUCCGGCCCCaCGAccucgggaggGACGGGc -3'
miRNA:   3'- ugcgCCGGGGCCGGGGcGCU----------CUGUCC- -5'
33361 3' -66.1 NC_007605.1 + 160196 0.77 0.10703
Target:  5'- gGCGCGGUCCCGGgCCCGgGGcGGCcGGa -3'
miRNA:   3'- -UGCGCCGGGGCCgGGGCgCU-CUGuCC- -5'
33361 3' -66.1 NC_007605.1 + 58343 0.73 0.197642
Target:  5'- cUGCGGCCCCGGCCuCUGCGGcccCGGc -3'
miRNA:   3'- uGCGCCGGGGCCGG-GGCGCUcu-GUCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.