miRNA display CGI


Results 21 - 40 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33361 3' -66.1 NC_007605.1 + 56120 0.68 0.408826
Target:  5'- -aGCGGuaucCCCUGGCCCCuggaGCGAGuugAGGa -3'
miRNA:   3'- ugCGCC----GGGGCCGGGG----CGCUCug-UCC- -5'
33361 3' -66.1 NC_007605.1 + 169658 0.69 0.3703
Target:  5'- uGCGCGGCCCCccauGCCCCaGCaAGccGCAGc -3'
miRNA:   3'- -UGCGCCGGGGc---CGGGG-CGcUC--UGUCc -5'
33361 3' -66.1 NC_007605.1 + 49693 0.71 0.281631
Target:  5'- gGCGCugaugaugccaaGGCCCCGGUCCCagcggaugcgGCGgccugagccugcuGGACGGGg -3'
miRNA:   3'- -UGCG------------CCGGGGCCGGGG----------CGC-------------UCUGUCC- -5'
33361 3' -66.1 NC_007605.1 + 160196 0.77 0.10703
Target:  5'- gGCGCGGUCCCGGgCCCGgGGcGGCcGGa -3'
miRNA:   3'- -UGCGCCGGGGCCgGGGCgCU-CUGuCC- -5'
33361 3' -66.1 NC_007605.1 + 160257 0.67 0.484071
Target:  5'- gGCGgGGCUCgGGCaCCUGUugGAGGCugAGGa -3'
miRNA:   3'- -UGCgCCGGGgCCG-GGGCG--CUCUG--UCC- -5'
33361 3' -66.1 NC_007605.1 + 159024 0.67 0.449757
Target:  5'- gACGCGgucaGCCCCggccaGGCCCUGCccccGGAUGGGc -3'
miRNA:   3'- -UGCGC----CGGGG-----CCGGGGCGc---UCUGUCC- -5'
33361 3' -66.1 NC_007605.1 + 157632 0.69 0.358506
Target:  5'- cCGCGGCCCgCGGgagcacccCCgCCGCcguucugaggcgucgGAGGCGGGa -3'
miRNA:   3'- uGCGCCGGG-GCC--------GG-GGCG---------------CUCUGUCC- -5'
33361 3' -66.1 NC_007605.1 + 58268 0.78 0.088118
Target:  5'- cCGCGGCCCCGGCCuCCGCGGcccCGGc -3'
miRNA:   3'- uGCGCCGGGGCCGG-GGCGCUcu-GUCc -5'
33361 3' -66.1 NC_007605.1 + 99755 0.67 0.448916
Target:  5'- gGCGCuGUCCCGGgCCCggcacucuaauuGCGuggucauGGACAGGa -3'
miRNA:   3'- -UGCGcCGGGGCCgGGG------------CGC-------UCUGUCC- -5'
33361 3' -66.1 NC_007605.1 + 58298 0.78 0.088118
Target:  5'- cCGCGGCCCCGGCCuCCGCGGcccCGGc -3'
miRNA:   3'- uGCGCCGGGGCCGG-GGCGCUcu-GUCc -5'
33361 3' -66.1 NC_007605.1 + 120028 0.69 0.362898
Target:  5'- ---aGGCUCCGGCCCCaCGAccucgggaggGACGGGc -3'
miRNA:   3'- ugcgCCGGGGCCGGGGcGCU----------CUGUCC- -5'
33361 3' -66.1 NC_007605.1 + 92491 0.68 0.416826
Target:  5'- cGCGCGGCCaucaUGGCCUC-CGGcaaGCAGGu -3'
miRNA:   3'- -UGCGCCGGg---GCCGGGGcGCUc--UGUCC- -5'
33361 3' -66.1 NC_007605.1 + 161064 0.7 0.307442
Target:  5'- aGCGUGGCCgagCCGGUCagcaCCGCGucGCAGGc -3'
miRNA:   3'- -UGCGCCGG---GGCCGG----GGCGCucUGUCC- -5'
33361 3' -66.1 NC_007605.1 + 170718 0.7 0.288383
Target:  5'- uGCGCGGCCCCccauGCCCCaCGGGGgucuuuccUGGGg -3'
miRNA:   3'- -UGCGCCGGGGc---CGGGGcGCUCU--------GUCC- -5'
33361 3' -66.1 NC_007605.1 + 61367 0.73 0.206866
Target:  5'- -gGUGGCggCGGCCCCGCG-GACAGa -3'
miRNA:   3'- ugCGCCGggGCCGGGGCGCuCUGUCc -5'
33361 3' -66.1 NC_007605.1 + 88031 0.76 0.132831
Target:  5'- uGCGaGGCCCCgcggcaggaGGCCCCGCGGcaggaggcccgcGGCAGGa -3'
miRNA:   3'- -UGCgCCGGGG---------CCGGGGCGCU------------CUGUCC- -5'
33361 3' -66.1 NC_007605.1 + 60439 0.66 0.501693
Target:  5'- gGCGCcuccuGGUgCCGGCCCUcaGgGAGAgcCGGGg -3'
miRNA:   3'- -UGCG-----CCGgGGCCGGGG--CgCUCU--GUCC- -5'
33361 3' -66.1 NC_007605.1 + 151035 0.67 0.484071
Target:  5'- aGCG-GGCCCaugaaGGCCCgggggcugGCGAGGCGGc -3'
miRNA:   3'- -UGCgCCGGGg----CCGGGg-------CGCUCUGUCc -5'
33361 3' -66.1 NC_007605.1 + 91938 0.67 0.466751
Target:  5'- -gGCcagGGCCgaGGCCCCGCGccuGCGGGc -3'
miRNA:   3'- ugCG---CCGGggCCGGGGCGCuc-UGUCC- -5'
33361 3' -66.1 NC_007605.1 + 54629 0.67 0.458212
Target:  5'- -gGCGGCCgaugccauccguUCGGCCCuCGCGcAGACGc- -3'
miRNA:   3'- ugCGCCGG------------GGCCGGG-GCGC-UCUGUcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.