miRNA display CGI


Results 41 - 60 of 155 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33361 3' -66.1 NC_007605.1 + 159990 0.67 0.466751
Target:  5'- uCGCcuGGCCCUGGUgcggggggCCUGCGAGgaggcgcugGCGGGg -3'
miRNA:   3'- uGCG--CCGGGGCCG--------GGGCGCUC---------UGUCC- -5'
33361 3' -66.1 NC_007605.1 + 99755 0.67 0.448916
Target:  5'- gGCGCuGUCCCGGgCCCggcacucuaauuGCGuggucauGGACAGGa -3'
miRNA:   3'- -UGCGcCGGGGCCgGGG------------CGC-------UCUGUCC- -5'
33361 3' -66.1 NC_007605.1 + 56120 0.68 0.408826
Target:  5'- -aGCGGuaucCCCUGGCCCCuggaGCGAGuugAGGa -3'
miRNA:   3'- ugCGCC----GGGGCCGGGG----CGCUCug-UCC- -5'
33361 3' -66.1 NC_007605.1 + 169658 0.69 0.3703
Target:  5'- uGCGCGGCCCCccauGCCCCaGCaAGccGCAGc -3'
miRNA:   3'- -UGCGCCGGGGc---CGGGG-CGcUC--UGUCc -5'
33361 3' -66.1 NC_007605.1 + 161064 0.7 0.307442
Target:  5'- aGCGUGGCCgagCCGGUCagcaCCGCGucGCAGGc -3'
miRNA:   3'- -UGCGCCGG---GGCCGG----GGCGCucUGUCC- -5'
33361 3' -66.1 NC_007605.1 + 170718 0.7 0.288383
Target:  5'- uGCGCGGCCCCccauGCCCCaCGGGGgucuuuccUGGGg -3'
miRNA:   3'- -UGCGCCGGGGc---CGGGGcGCUCU--------GUCC- -5'
33361 3' -66.1 NC_007605.1 + 61367 0.73 0.206866
Target:  5'- -gGUGGCggCGGCCCCGCG-GACAGa -3'
miRNA:   3'- ugCGCCGggGCCGGGGCGCuCUGUCc -5'
33361 3' -66.1 NC_007605.1 + 24675 0.68 0.424921
Target:  5'- -aGCuGGCCCCgaggaGGCgCCCG-GAGugGGGc -3'
miRNA:   3'- ugCG-CCGGGG-----CCG-GGGCgCUCugUCC- -5'
33361 3' -66.1 NC_007605.1 + 27744 0.68 0.424921
Target:  5'- -aGCuGGCCCCgaggaGGCgCCCG-GAGugGGGc -3'
miRNA:   3'- ugCG-CCGGGG-----CCG-GGGCgCUCugUCC- -5'
33361 3' -66.1 NC_007605.1 + 30813 0.68 0.424921
Target:  5'- -aGCuGGCCCCgaggaGGCgCCCG-GAGugGGGc -3'
miRNA:   3'- ugCG-CCGGGG-----CCG-GGGCgCUCugUCC- -5'
33361 3' -66.1 NC_007605.1 + 21606 0.68 0.424921
Target:  5'- -aGCuGGCCCCgaggaGGCgCCCG-GAGugGGGc -3'
miRNA:   3'- ugCG-CCGGGG-----CCG-GGGCgCUCugUCC- -5'
33361 3' -66.1 NC_007605.1 + 18537 0.68 0.424921
Target:  5'- -aGCuGGCCCCgaggaGGCgCCCG-GAGugGGGc -3'
miRNA:   3'- ugCG-CCGGGG-----CCG-GGGCgCUCugUCC- -5'
33361 3' -66.1 NC_007605.1 + 15468 0.68 0.424921
Target:  5'- -aGCuGGCCCCgaggaGGCgCCCG-GAGugGGGc -3'
miRNA:   3'- ugCG-CCGGGG-----CCG-GGGCgCUCugUCC- -5'
33361 3' -66.1 NC_007605.1 + 141224 0.69 0.341315
Target:  5'- cCGgGGUUCCGGCCCUG-GAGcuCGGGg -3'
miRNA:   3'- uGCgCCGGGGCCGGGGCgCUCu-GUCC- -5'
33361 3' -66.1 NC_007605.1 + 142549 0.69 0.341315
Target:  5'- cCGgGGUUCCGGCCCUG-GAGcuCGGGg -3'
miRNA:   3'- uGCgCCGGGGCCGGGGCgCUCu-GUCC- -5'
33361 3' -66.1 NC_007605.1 + 142651 0.69 0.341315
Target:  5'- cCGgGGUUCCGGCCCUG-GAGcuCGGGg -3'
miRNA:   3'- uGCgCCGGGGCCGGGGCgCUCu-GUCC- -5'
33361 3' -66.1 NC_007605.1 + 142752 0.69 0.341315
Target:  5'- cCGgGGUUCCGGCCCUG-GAGcuCGGGg -3'
miRNA:   3'- uGCgCCGGGGCCGGGGCgCUCu-GUCC- -5'
33361 3' -66.1 NC_007605.1 + 136317 0.7 0.288383
Target:  5'- cUGCGGaggUUCGGCCgCCGCGGGcCAGGa -3'
miRNA:   3'- uGCGCCg--GGGCCGG-GGCGCUCuGUCC- -5'
33361 3' -66.1 NC_007605.1 + 142854 0.69 0.341315
Target:  5'- cCGgGGUUCCGGCCCUG-GAGcuCGGGg -3'
miRNA:   3'- uGCgCCGGGGCCGGGGCgCUCu-GUCC- -5'
33361 3' -66.1 NC_007605.1 + 141122 0.69 0.341315
Target:  5'- cCGgGGUUCCGGCCCUG-GAGcuCGGGg -3'
miRNA:   3'- uGCgCCGGGGCCGGGGCgCUCu-GUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.