Results 61 - 80 of 155 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33361 | 3' | -66.1 | NC_007605.1 | + | 22147 | 0.68 | 0.400922 |
Target: 5'- uCGgGGCCCaGGCCCCaGaguccaGAGGuCAGGg -3' miRNA: 3'- uGCgCCGGGgCCGGGG-Cg-----CUCU-GUCC- -5' |
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33361 | 3' | -66.1 | NC_007605.1 | + | 19078 | 0.68 | 0.400922 |
Target: 5'- uCGgGGCCCaGGCCCCaGaguccaGAGGuCAGGg -3' miRNA: 3'- uGCgCCGGGgCCGGGG-Cg-----CUCU-GUCC- -5' |
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33361 | 3' | -66.1 | NC_007605.1 | + | 142243 | 0.69 | 0.341315 |
Target: 5'- cCGgGGUUCCGGCCCUG-GAGcuCGGGg -3' miRNA: 3'- uGCgCCGGGGCCGGGGCgCUCu-GUCC- -5' |
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33361 | 3' | -66.1 | NC_007605.1 | + | 142039 | 0.69 | 0.341315 |
Target: 5'- cCGgGGUUCCGGCCCUG-GAGcuCGGGg -3' miRNA: 3'- uGCgCCGGGGCCGGGGCgCUCu-GUCC- -5' |
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33361 | 3' | -66.1 | NC_007605.1 | + | 142141 | 0.69 | 0.341315 |
Target: 5'- cCGgGGUUCCGGCCCUG-GAGcuCGGGg -3' miRNA: 3'- uGCgCCGGGGCCGGGGCgCUCu-GUCC- -5' |
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33361 | 3' | -66.1 | NC_007605.1 | + | 142345 | 0.69 | 0.341315 |
Target: 5'- cCGgGGUUCCGGCCCUG-GAGcuCGGGg -3' miRNA: 3'- uGCgCCGGGGCCGGGGCgCUCu-GUCC- -5' |
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33361 | 3' | -66.1 | NC_007605.1 | + | 142447 | 0.69 | 0.341315 |
Target: 5'- cCGgGGUUCCGGCCCUG-GAGcuCGGGg -3' miRNA: 3'- uGCgCCGGGGCCGGGGCgCUCu-GUCC- -5' |
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33361 | 3' | -66.1 | NC_007605.1 | + | 142549 | 0.69 | 0.341315 |
Target: 5'- cCGgGGUUCCGGCCCUG-GAGcuCGGGg -3' miRNA: 3'- uGCgCCGGGGCCGGGGCgCUCu-GUCC- -5' |
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33361 | 3' | -66.1 | NC_007605.1 | + | 142651 | 0.69 | 0.341315 |
Target: 5'- cCGgGGUUCCGGCCCUG-GAGcuCGGGg -3' miRNA: 3'- uGCgCCGGGGCCGGGGCgCUCu-GUCC- -5' |
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33361 | 3' | -66.1 | NC_007605.1 | + | 25216 | 0.68 | 0.400922 |
Target: 5'- uCGgGGCCCaGGCCCCaGaguccaGAGGuCAGGg -3' miRNA: 3'- uGCgCCGGGgCCGGGG-Cg-----CUCU-GUCC- -5' |
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33361 | 3' | -66.1 | NC_007605.1 | + | 28285 | 0.68 | 0.400922 |
Target: 5'- uCGgGGCCCaGGCCCCaGaguccaGAGGuCAGGg -3' miRNA: 3'- uGCgCCGGGgCCGGGG-Cg-----CUCU-GUCC- -5' |
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33361 | 3' | -66.1 | NC_007605.1 | + | 24675 | 0.68 | 0.424921 |
Target: 5'- -aGCuGGCCCCgaggaGGCgCCCG-GAGugGGGc -3' miRNA: 3'- ugCG-CCGGGG-----CCG-GGGCgCUCugUCC- -5' |
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33361 | 3' | -66.1 | NC_007605.1 | + | 21606 | 0.68 | 0.424921 |
Target: 5'- -aGCuGGCCCCgaggaGGCgCCCG-GAGugGGGc -3' miRNA: 3'- ugCG-CCGGGG-----CCG-GGGCgCUCugUCC- -5' |
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33361 | 3' | -66.1 | NC_007605.1 | + | 18537 | 0.68 | 0.424921 |
Target: 5'- -aGCuGGCCCCgaggaGGCgCCCG-GAGugGGGc -3' miRNA: 3'- ugCG-CCGGGG-----CCG-GGGCgCUCugUCC- -5' |
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33361 | 3' | -66.1 | NC_007605.1 | + | 15468 | 0.68 | 0.424921 |
Target: 5'- -aGCuGGCCCCgaggaGGCgCCCG-GAGugGGGc -3' miRNA: 3'- ugCG-CCGGGG-----CCG-GGGCgCUCugUCC- -5' |
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33361 | 3' | -66.1 | NC_007605.1 | + | 12399 | 0.68 | 0.424921 |
Target: 5'- -aGCuGGCCCCgaggaGGCgCCCG-GAGugGGGc -3' miRNA: 3'- ugCG-CCGGGG-----CCG-GGGCgCUCugUCC- -5' |
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33361 | 3' | -66.1 | NC_007605.1 | + | 153997 | 0.68 | 0.416826 |
Target: 5'- gUGCGGCCCUGcagcGUCaCCGUcucggcgauggaGAGGCAGGg -3' miRNA: 3'- uGCGCCGGGGC----CGG-GGCG------------CUCUGUCC- -5' |
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33361 | 3' | -66.1 | NC_007605.1 | + | 126175 | 0.68 | 0.408826 |
Target: 5'- cCGgGGgCCCGGCCCggccaagaGCGaAGACgAGGa -3' miRNA: 3'- uGCgCCgGGGCCGGGg-------CGC-UCUG-UCC- -5' |
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33361 | 3' | -66.1 | NC_007605.1 | + | 34423 | 0.68 | 0.400922 |
Target: 5'- uCGgGGCCCaGGCCCCaGaguccaGAGGuCAGGg -3' miRNA: 3'- uGCgCCGGGgCCGGGG-Cg-----CUCU-GUCC- -5' |
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33361 | 3' | -66.1 | NC_007605.1 | + | 31354 | 0.68 | 0.400922 |
Target: 5'- uCGgGGCCCaGGCCCCaGaguccaGAGGuCAGGg -3' miRNA: 3'- uGCgCCGGGgCCGGGG-Cg-----CUCU-GUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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