miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33361 5' -55.6 NC_007605.1 + 123766 1.08 0.003304
Target:  5'- cUCCCUGCAACACAGGAGGCCCAAUCAc -3'
miRNA:   3'- -AGGGACGUUGUGUCCUCCGGGUUAGU- -5'
33361 5' -55.6 NC_007605.1 + 87951 0.77 0.350243
Target:  5'- gCCCcGCGGCaggaggccccacgGCAGGAGGCCCAGUa- -3'
miRNA:   3'- aGGGaCGUUG-------------UGUCCUCCGGGUUAgu -5'
33361 5' -55.6 NC_007605.1 + 116567 0.74 0.528929
Target:  5'- aUCCgUGCcccccucccccCGCGGGAGGCUCAAUCGg -3'
miRNA:   3'- -AGGgACGuu---------GUGUCCUCCGGGUUAGU- -5'
33361 5' -55.6 NC_007605.1 + 88070 0.73 0.550931
Target:  5'- gCCCcGCG--GCAGGAGGCCCAG-CGg -3'
miRNA:   3'- aGGGaCGUugUGUCCUCCGGGUUaGU- -5'
33361 5' -55.6 NC_007605.1 + 88025 0.73 0.590559
Target:  5'- gCCCcGCGGCaggaggccccgcgGCAGGAGGCCCGcggCAg -3'
miRNA:   3'- aGGGaCGUUG-------------UGUCCUCCGGGUua-GU- -5'
33361 5' -55.6 NC_007605.1 + 164115 0.72 0.62241
Target:  5'- gCUCUGC---ACAGGAGGCCCGAc-- -3'
miRNA:   3'- aGGGACGuugUGUCCUCCGGGUUagu -5'
33361 5' -55.6 NC_007605.1 + 30121 0.71 0.653301
Target:  5'- cCUCUGgccCGAUACGGGGGGCCCGGg-- -3'
miRNA:   3'- aGGGAC---GUUGUGUCCUCCGGGUUagu -5'
33361 5' -55.6 NC_007605.1 + 72973 0.71 0.663576
Target:  5'- cUCCaGCGAC-CAGGGGGCCCccuuGAUCu -3'
miRNA:   3'- aGGGaCGUUGuGUCCUCCGGG----UUAGu -5'
33361 5' -55.6 NC_007605.1 + 121260 0.71 0.684038
Target:  5'- gCCCUGCAGCuuucuGCAGGAGGCauuCCccgCAc -3'
miRNA:   3'- aGGGACGUUG-----UGUCCUCCG---GGuuaGU- -5'
33361 5' -55.6 NC_007605.1 + 58704 0.7 0.724369
Target:  5'- aUCCUGCAguacguggggGCAcCAGG-GGCCCAGUaCAc -3'
miRNA:   3'- aGGGACGU----------UGU-GUCCuCCGGGUUA-GU- -5'
33361 5' -55.6 NC_007605.1 + 112166 0.7 0.743111
Target:  5'- aCgCUGCGGCACGGGgcaaaagGGGCCCuauUCu -3'
miRNA:   3'- aGgGACGUUGUGUCC-------UCCGGGuu-AGu -5'
33361 5' -55.6 NC_007605.1 + 58881 0.7 0.744089
Target:  5'- gUCCUGCAcggcaguuACaACGGGGuGGCCCAGUUc -3'
miRNA:   3'- aGGGACGU--------UG-UGUCCU-CCGGGUUAGu -5'
33361 5' -55.6 NC_007605.1 + 98577 0.7 0.753805
Target:  5'- ----aGCAACACccccuGGGAGGCCCAcgCGu -3'
miRNA:   3'- agggaCGUUGUG-----UCCUCCGGGUuaGU- -5'
33361 5' -55.6 NC_007605.1 + 68014 0.69 0.782263
Target:  5'- cUCCUUGCccagGACACAGGuGcGCCCGuaggCAa -3'
miRNA:   3'- -AGGGACG----UUGUGUCCuC-CGGGUua--GU- -5'
33361 5' -55.6 NC_007605.1 + 87981 0.69 0.791488
Target:  5'- gCCCcGCG--GCAGGAGGCCCcg-CGg -3'
miRNA:   3'- aGGGaCGUugUGUCCUCCGGGuuaGU- -5'
33361 5' -55.6 NC_007605.1 + 63241 0.69 0.795138
Target:  5'- gCCCUGCGcgccagacggccgccGCACucagcgAGGAGGCCUGcgCGu -3'
miRNA:   3'- aGGGACGU---------------UGUG------UCCUCCGGGUuaGU- -5'
33361 5' -55.6 NC_007605.1 + 107027 0.69 0.809493
Target:  5'- -gCCUGCGGCG-AGGuGGCgCUAAUCAa -3'
miRNA:   3'- agGGACGUUGUgUCCuCCG-GGUUAGU- -5'
33361 5' -55.6 NC_007605.1 + 75578 0.69 0.809493
Target:  5'- aCCCUGCAugGCc--AGGCCCGAc-- -3'
miRNA:   3'- aGGGACGUugUGuccUCCGGGUUagu -5'
33361 5' -55.6 NC_007605.1 + 60873 0.68 0.818255
Target:  5'- cUCCCcgGCAuCGgAGG-GGCCCcGUCAu -3'
miRNA:   3'- -AGGGa-CGUuGUgUCCuCCGGGuUAGU- -5'
33361 5' -55.6 NC_007605.1 + 125621 0.68 0.818255
Target:  5'- gCCCUuCAGCggGCGGGAGGCCagacUCAa -3'
miRNA:   3'- aGGGAcGUUG--UGUCCUCCGGguu-AGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.