miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33361 5' -55.6 NC_007605.1 + 132290 0.68 0.851513
Target:  5'- aCCCUGCc---CAGGGGaGCCCAGcCAc -3'
miRNA:   3'- aGGGACGuuguGUCCUC-CGGGUUaGU- -5'
33361 5' -55.6 NC_007605.1 + 9629 0.68 0.851513
Target:  5'- gCCCUGUuccacauguGACACGGGGGGggaCCAAaCAc -3'
miRNA:   3'- aGGGACG---------UUGUGUCCUCCg--GGUUaGU- -5'
33361 5' -55.6 NC_007605.1 + 72910 0.68 0.851513
Target:  5'- aCCCagGCGGCGCAuGAGGCgCAGUa- -3'
miRNA:   3'- aGGGa-CGUUGUGUcCUCCGgGUUAgu -5'
33361 5' -55.6 NC_007605.1 + 43000 0.67 0.859342
Target:  5'- aUCUgCUGCAACAgAauuuaaaaguGGGGGCCgGGUCAu -3'
miRNA:   3'- -AGG-GACGUUGUgU----------CCUCCGGgUUAGU- -5'
33361 5' -55.6 NC_007605.1 + 92080 0.67 0.866962
Target:  5'- gUCCgGCGugGCuggaguAGGAGGCCCGGggCAg -3'
miRNA:   3'- aGGGaCGUugUG------UCCUCCGGGUUa-GU- -5'
33361 5' -55.6 NC_007605.1 + 145430 0.67 0.874369
Target:  5'- gUCCCaaaUGUcaccacagAACACAGGGGGCUgGAUUu -3'
miRNA:   3'- -AGGG---ACG--------UUGUGUCCUCCGGgUUAGu -5'
33361 5' -55.6 NC_007605.1 + 74461 0.67 0.881556
Target:  5'- -aCCUGcCGGCGgAGGAGGCCU--UCc -3'
miRNA:   3'- agGGAC-GUUGUgUCCUCCGGGuuAGu -5'
33361 5' -55.6 NC_007605.1 + 65471 0.67 0.888519
Target:  5'- uUCaCCagGCAGCGCGGGAGGCa-GAUg- -3'
miRNA:   3'- -AG-GGa-CGUUGUGUCCUCCGggUUAgu -5'
33361 5' -55.6 NC_007605.1 + 10765 0.67 0.895252
Target:  5'- gCCCUGCAAgGCcuG-GGCCCGGg-- -3'
miRNA:   3'- aGGGACGUUgUGucCuCCGGGUUagu -5'
33361 5' -55.6 NC_007605.1 + 60240 0.67 0.895252
Target:  5'- cUCCCUGagggcCGGCAcCAGGAGGCgCCu-UCu -3'
miRNA:   3'- -AGGGAC-----GUUGU-GUCCUCCG-GGuuAGu -5'
33361 5' -55.6 NC_007605.1 + 67040 0.66 0.901754
Target:  5'- gCCCUGCu--GCGGGuccgGGGCCUAAUg- -3'
miRNA:   3'- aGGGACGuugUGUCC----UCCGGGUUAgu -5'
33361 5' -55.6 NC_007605.1 + 53700 0.66 0.901754
Target:  5'- cUCCCgacuggagGCcauCAucCAGGAGGCCCAGg-- -3'
miRNA:   3'- -AGGGa-------CGuu-GU--GUCCUCCGGGUUagu -5'
33361 5' -55.6 NC_007605.1 + 74890 0.66 0.901754
Target:  5'- -aCCUGC-ACACcaggGGGcAGGCCCAGaUCu -3'
miRNA:   3'- agGGACGuUGUG----UCC-UCCGGGUU-AGu -5'
33361 5' -55.6 NC_007605.1 + 126301 0.66 0.901754
Target:  5'- uUCCCUu---CGCAGGAGGgccaCCAGUCu -3'
miRNA:   3'- -AGGGAcguuGUGUCCUCCg---GGUUAGu -5'
33361 5' -55.6 NC_007605.1 + 74832 0.66 0.914045
Target:  5'- gUCCCUGagAGCugucguggguGguGGAGGCCCAGg-- -3'
miRNA:   3'- -AGGGACg-UUG----------UguCCUCCGGGUUagu -5'
33361 5' -55.6 NC_007605.1 + 105574 0.66 0.914045
Target:  5'- gCCCUGaCcGCGCGucGAGGCCCAGg-- -3'
miRNA:   3'- aGGGAC-GuUGUGUc-CUCCGGGUUagu -5'
33361 5' -55.6 NC_007605.1 + 133752 0.66 0.922078
Target:  5'- cUCCCUGCcuCACGGGaAgagcugcuggagcugGGCCCGGa-- -3'
miRNA:   3'- -AGGGACGuuGUGUCC-U---------------CCGGGUUagu -5'
33361 5' -55.6 NC_007605.1 + 28362 0.66 0.925376
Target:  5'- cCCCgGCAGCcCGGGcGGCCCc---- -3'
miRNA:   3'- aGGGaCGUUGuGUCCuCCGGGuuagu -5'
33361 5' -55.6 NC_007605.1 + 34500 0.66 0.925376
Target:  5'- cCCCgGCAGCcCGGGcGGCCCc---- -3'
miRNA:   3'- aGGGaCGUUGuGUCCuCCGGGuuagu -5'
33361 5' -55.6 NC_007605.1 + 31431 0.66 0.925376
Target:  5'- cCCCgGCAGCcCGGGcGGCCCc---- -3'
miRNA:   3'- aGGGaCGUUGuGUCCuCCGGGuuagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.