Results 21 - 40 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33361 | 5' | -55.6 | NC_007605.1 | + | 10765 | 0.67 | 0.895252 |
Target: 5'- gCCCUGCAAgGCcuG-GGCCCGGg-- -3' miRNA: 3'- aGGGACGUUgUGucCuCCGGGUUagu -5' |
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33361 | 5' | -55.6 | NC_007605.1 | + | 65471 | 0.67 | 0.888519 |
Target: 5'- uUCaCCagGCAGCGCGGGAGGCa-GAUg- -3' miRNA: 3'- -AG-GGa-CGUUGUGUCCUCCGggUUAgu -5' |
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33361 | 5' | -55.6 | NC_007605.1 | + | 74461 | 0.67 | 0.881556 |
Target: 5'- -aCCUGcCGGCGgAGGAGGCCU--UCc -3' miRNA: 3'- agGGAC-GUUGUgUCCUCCGGGuuAGu -5' |
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33361 | 5' | -55.6 | NC_007605.1 | + | 145430 | 0.67 | 0.874369 |
Target: 5'- gUCCCaaaUGUcaccacagAACACAGGGGGCUgGAUUu -3' miRNA: 3'- -AGGG---ACG--------UUGUGUCCUCCGGgUUAGu -5' |
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33361 | 5' | -55.6 | NC_007605.1 | + | 92080 | 0.67 | 0.866962 |
Target: 5'- gUCCgGCGugGCuggaguAGGAGGCCCGGggCAg -3' miRNA: 3'- aGGGaCGUugUG------UCCUCCGGGUUa-GU- -5' |
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33361 | 5' | -55.6 | NC_007605.1 | + | 43000 | 0.67 | 0.859342 |
Target: 5'- aUCUgCUGCAACAgAauuuaaaaguGGGGGCCgGGUCAu -3' miRNA: 3'- -AGG-GACGUUGUgU----------CCUCCGGgUUAGU- -5' |
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33361 | 5' | -55.6 | NC_007605.1 | + | 9629 | 0.68 | 0.851513 |
Target: 5'- gCCCUGUuccacauguGACACGGGGGGggaCCAAaCAc -3' miRNA: 3'- aGGGACG---------UUGUGUCCUCCg--GGUUaGU- -5' |
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33361 | 5' | -55.6 | NC_007605.1 | + | 132290 | 0.68 | 0.851513 |
Target: 5'- aCCCUGCc---CAGGGGaGCCCAGcCAc -3' miRNA: 3'- aGGGACGuuguGUCCUC-CGGGUUaGU- -5' |
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33361 | 5' | -55.6 | NC_007605.1 | + | 72910 | 0.68 | 0.851513 |
Target: 5'- aCCCagGCGGCGCAuGAGGCgCAGUa- -3' miRNA: 3'- aGGGa-CGUUGUGUcCUCCGgGUUAgu -5' |
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33361 | 5' | -55.6 | NC_007605.1 | + | 60873 | 0.68 | 0.818255 |
Target: 5'- cUCCCcgGCAuCGgAGG-GGCCCcGUCAu -3' miRNA: 3'- -AGGGa-CGUuGUgUCCuCCGGGuUAGU- -5' |
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33361 | 5' | -55.6 | NC_007605.1 | + | 125621 | 0.68 | 0.818255 |
Target: 5'- gCCCUuCAGCggGCGGGAGGCCagacUCAa -3' miRNA: 3'- aGGGAcGUUG--UGUCCUCCGGguu-AGU- -5' |
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33361 | 5' | -55.6 | NC_007605.1 | + | 75578 | 0.69 | 0.809493 |
Target: 5'- aCCCUGCAugGCc--AGGCCCGAc-- -3' miRNA: 3'- aGGGACGUugUGuccUCCGGGUUagu -5' |
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33361 | 5' | -55.6 | NC_007605.1 | + | 107027 | 0.69 | 0.809493 |
Target: 5'- -gCCUGCGGCG-AGGuGGCgCUAAUCAa -3' miRNA: 3'- agGGACGUUGUgUCCuCCG-GGUUAGU- -5' |
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33361 | 5' | -55.6 | NC_007605.1 | + | 63241 | 0.69 | 0.795138 |
Target: 5'- gCCCUGCGcgccagacggccgccGCACucagcgAGGAGGCCUGcgCGu -3' miRNA: 3'- aGGGACGU---------------UGUG------UCCUCCGGGUuaGU- -5' |
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33361 | 5' | -55.6 | NC_007605.1 | + | 87981 | 0.69 | 0.791488 |
Target: 5'- gCCCcGCG--GCAGGAGGCCCcg-CGg -3' miRNA: 3'- aGGGaCGUugUGUCCUCCGGGuuaGU- -5' |
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33361 | 5' | -55.6 | NC_007605.1 | + | 68014 | 0.69 | 0.782263 |
Target: 5'- cUCCUUGCccagGACACAGGuGcGCCCGuaggCAa -3' miRNA: 3'- -AGGGACG----UUGUGUCCuC-CGGGUua--GU- -5' |
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33361 | 5' | -55.6 | NC_007605.1 | + | 98577 | 0.7 | 0.753805 |
Target: 5'- ----aGCAACACccccuGGGAGGCCCAcgCGu -3' miRNA: 3'- agggaCGUUGUG-----UCCUCCGGGUuaGU- -5' |
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33361 | 5' | -55.6 | NC_007605.1 | + | 58881 | 0.7 | 0.744089 |
Target: 5'- gUCCUGCAcggcaguuACaACGGGGuGGCCCAGUUc -3' miRNA: 3'- aGGGACGU--------UG-UGUCCU-CCGGGUUAGu -5' |
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33361 | 5' | -55.6 | NC_007605.1 | + | 112166 | 0.7 | 0.743111 |
Target: 5'- aCgCUGCGGCACGGGgcaaaagGGGCCCuauUCu -3' miRNA: 3'- aGgGACGUUGUGUCC-------UCCGGGuu-AGu -5' |
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33361 | 5' | -55.6 | NC_007605.1 | + | 58704 | 0.7 | 0.724369 |
Target: 5'- aUCCUGCAguacguggggGCAcCAGG-GGCCCAGUaCAc -3' miRNA: 3'- aGGGACGU----------UGU-GUCCuCCGGGUUA-GU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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