miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33361 5' -55.6 NC_007605.1 + 9629 0.68 0.851513
Target:  5'- gCCCUGUuccacauguGACACGGGGGGggaCCAAaCAc -3'
miRNA:   3'- aGGGACG---------UUGUGUCCUCCg--GGUUaGU- -5'
33361 5' -55.6 NC_007605.1 + 10765 0.67 0.895252
Target:  5'- gCCCUGCAAgGCcuG-GGCCCGGg-- -3'
miRNA:   3'- aGGGACGUUgUGucCuCCGGGUUagu -5'
33361 5' -55.6 NC_007605.1 + 13017 0.66 0.925376
Target:  5'- cCCCgGCAGCcCGGGcGGCCCc---- -3'
miRNA:   3'- aGGGaCGUUGuGUCCuCCGGGuuagu -5'
33361 5' -55.6 NC_007605.1 + 16086 0.66 0.925376
Target:  5'- cCCCgGCAGCcCGGGcGGCCCc---- -3'
miRNA:   3'- aGGGaCGUUGuGUCCuCCGGGuuagu -5'
33361 5' -55.6 NC_007605.1 + 19155 0.66 0.925376
Target:  5'- cCCCgGCAGCcCGGGcGGCCCc---- -3'
miRNA:   3'- aGGGaCGUUGuGUCCuCCGGGuuagu -5'
33361 5' -55.6 NC_007605.1 + 22224 0.66 0.925376
Target:  5'- cCCCgGCAGCcCGGGcGGCCCc---- -3'
miRNA:   3'- aGGGaCGUUGuGUCCuCCGGGuuagu -5'
33361 5' -55.6 NC_007605.1 + 25293 0.66 0.925376
Target:  5'- cCCCgGCAGCcCGGGcGGCCCc---- -3'
miRNA:   3'- aGGGaCGUUGuGUCCuCCGGGuuagu -5'
33361 5' -55.6 NC_007605.1 + 28362 0.66 0.925376
Target:  5'- cCCCgGCAGCcCGGGcGGCCCc---- -3'
miRNA:   3'- aGGGaCGUUGuGUCCuCCGGGuuagu -5'
33361 5' -55.6 NC_007605.1 + 30121 0.71 0.653301
Target:  5'- cCUCUGgccCGAUACGGGGGGCCCGGg-- -3'
miRNA:   3'- aGGGAC---GUUGUGUCCUCCGGGUUagu -5'
33361 5' -55.6 NC_007605.1 + 31431 0.66 0.925376
Target:  5'- cCCCgGCAGCcCGGGcGGCCCc---- -3'
miRNA:   3'- aGGGaCGUUGuGUCCuCCGGGuuagu -5'
33361 5' -55.6 NC_007605.1 + 34500 0.66 0.925376
Target:  5'- cCCCgGCAGCcCGGGcGGCCCc---- -3'
miRNA:   3'- aGGGaCGUUGuGUCCuCCGGGuuagu -5'
33361 5' -55.6 NC_007605.1 + 40538 0.66 0.930678
Target:  5'- gUCCCUGCcuGGCAcCAGGGuccGGCCUGGg-- -3'
miRNA:   3'- -AGGGACG--UUGU-GUCCU---CCGGGUUagu -5'
33361 5' -55.6 NC_007605.1 + 43000 0.67 0.859342
Target:  5'- aUCUgCUGCAACAgAauuuaaaaguGGGGGCCgGGUCAu -3'
miRNA:   3'- -AGG-GACGUUGUgU----------CCUCCGGgUUAGU- -5'
33361 5' -55.6 NC_007605.1 + 53700 0.66 0.901754
Target:  5'- cUCCCgacuggagGCcauCAucCAGGAGGCCCAGg-- -3'
miRNA:   3'- -AGGGa-------CGuu-GU--GUCCUCCGGGUUagu -5'
33361 5' -55.6 NC_007605.1 + 58704 0.7 0.724369
Target:  5'- aUCCUGCAguacguggggGCAcCAGG-GGCCCAGUaCAc -3'
miRNA:   3'- aGGGACGU----------UGU-GUCCuCCGGGUUA-GU- -5'
33361 5' -55.6 NC_007605.1 + 58881 0.7 0.744089
Target:  5'- gUCCUGCAcggcaguuACaACGGGGuGGCCCAGUUc -3'
miRNA:   3'- aGGGACGU--------UG-UGUCCU-CCGGGUUAGu -5'
33361 5' -55.6 NC_007605.1 + 60240 0.67 0.895252
Target:  5'- cUCCCUGagggcCGGCAcCAGGAGGCgCCu-UCu -3'
miRNA:   3'- -AGGGAC-----GUUGU-GUCCUCCG-GGuuAGu -5'
33361 5' -55.6 NC_007605.1 + 60873 0.68 0.818255
Target:  5'- cUCCCcgGCAuCGgAGG-GGCCCcGUCAu -3'
miRNA:   3'- -AGGGa-CGUuGUgUCCuCCGGGuUAGU- -5'
33361 5' -55.6 NC_007605.1 + 63241 0.69 0.795138
Target:  5'- gCCCUGCGcgccagacggccgccGCACucagcgAGGAGGCCUGcgCGu -3'
miRNA:   3'- aGGGACGU---------------UGUG------UCCUCCGGGUuaGU- -5'
33361 5' -55.6 NC_007605.1 + 64472 0.66 0.925376
Target:  5'- gCCCUGCA--GCGGGccAGGCCgGAg-- -3'
miRNA:   3'- aGGGACGUugUGUCC--UCCGGgUUagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.