miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33361 5' -55.6 NC_007605.1 + 65471 0.67 0.888519
Target:  5'- uUCaCCagGCAGCGCGGGAGGCa-GAUg- -3'
miRNA:   3'- -AG-GGa-CGUUGUGUCCUCCGggUUAgu -5'
33361 5' -55.6 NC_007605.1 + 67040 0.66 0.901754
Target:  5'- gCCCUGCu--GCGGGuccgGGGCCUAAUg- -3'
miRNA:   3'- aGGGACGuugUGUCC----UCCGGGUUAgu -5'
33361 5' -55.6 NC_007605.1 + 68014 0.69 0.782263
Target:  5'- cUCCUUGCccagGACACAGGuGcGCCCGuaggCAa -3'
miRNA:   3'- -AGGGACG----UUGUGUCCuC-CGGGUua--GU- -5'
33361 5' -55.6 NC_007605.1 + 72910 0.68 0.851513
Target:  5'- aCCCagGCGGCGCAuGAGGCgCAGUa- -3'
miRNA:   3'- aGGGa-CGUUGUGUcCUCCGgGUUAgu -5'
33361 5' -55.6 NC_007605.1 + 72973 0.71 0.663576
Target:  5'- cUCCaGCGAC-CAGGGGGCCCccuuGAUCu -3'
miRNA:   3'- aGGGaCGUUGuGUCCUCCGGG----UUAGu -5'
33361 5' -55.6 NC_007605.1 + 74461 0.67 0.881556
Target:  5'- -aCCUGcCGGCGgAGGAGGCCU--UCc -3'
miRNA:   3'- agGGAC-GUUGUgUCCUCCGGGuuAGu -5'
33361 5' -55.6 NC_007605.1 + 74832 0.66 0.914045
Target:  5'- gUCCCUGagAGCugucguggguGguGGAGGCCCAGg-- -3'
miRNA:   3'- -AGGGACg-UUG----------UguCCUCCGGGUUagu -5'
33361 5' -55.6 NC_007605.1 + 74890 0.66 0.901754
Target:  5'- -aCCUGC-ACACcaggGGGcAGGCCCAGaUCu -3'
miRNA:   3'- agGGACGuUGUG----UCC-UCCGGGUU-AGu -5'
33361 5' -55.6 NC_007605.1 + 75578 0.69 0.809493
Target:  5'- aCCCUGCAugGCc--AGGCCCGAc-- -3'
miRNA:   3'- aGGGACGUugUGuccUCCGGGUUagu -5'
33361 5' -55.6 NC_007605.1 + 87951 0.77 0.350243
Target:  5'- gCCCcGCGGCaggaggccccacgGCAGGAGGCCCAGUa- -3'
miRNA:   3'- aGGGaCGUUG-------------UGUCCUCCGGGUUAgu -5'
33361 5' -55.6 NC_007605.1 + 87981 0.69 0.791488
Target:  5'- gCCCcGCG--GCAGGAGGCCCcg-CGg -3'
miRNA:   3'- aGGGaCGUugUGUCCUCCGGGuuaGU- -5'
33361 5' -55.6 NC_007605.1 + 88025 0.73 0.590559
Target:  5'- gCCCcGCGGCaggaggccccgcgGCAGGAGGCCCGcggCAg -3'
miRNA:   3'- aGGGaCGUUG-------------UGUCCUCCGGGUua-GU- -5'
33361 5' -55.6 NC_007605.1 + 88070 0.73 0.550931
Target:  5'- gCCCcGCG--GCAGGAGGCCCAG-CGg -3'
miRNA:   3'- aGGGaCGUugUGUCCUCCGGGUUaGU- -5'
33361 5' -55.6 NC_007605.1 + 92080 0.67 0.866962
Target:  5'- gUCCgGCGugGCuggaguAGGAGGCCCGGggCAg -3'
miRNA:   3'- aGGGaCGUugUG------UCCUCCGGGUUa-GU- -5'
33361 5' -55.6 NC_007605.1 + 98577 0.7 0.753805
Target:  5'- ----aGCAACACccccuGGGAGGCCCAcgCGu -3'
miRNA:   3'- agggaCGUUGUG-----UCCUCCGGGUuaGU- -5'
33361 5' -55.6 NC_007605.1 + 105574 0.66 0.914045
Target:  5'- gCCCUGaCcGCGCGucGAGGCCCAGg-- -3'
miRNA:   3'- aGGGAC-GuUGUGUc-CUCCGGGUUagu -5'
33361 5' -55.6 NC_007605.1 + 107027 0.69 0.809493
Target:  5'- -gCCUGCGGCG-AGGuGGCgCUAAUCAa -3'
miRNA:   3'- agGGACGUUGUgUCCuCCG-GGUUAGU- -5'
33361 5' -55.6 NC_007605.1 + 112166 0.7 0.743111
Target:  5'- aCgCUGCGGCACGGGgcaaaagGGGCCCuauUCu -3'
miRNA:   3'- aGgGACGUUGUGUCC-------UCCGGGuu-AGu -5'
33361 5' -55.6 NC_007605.1 + 116567 0.74 0.528929
Target:  5'- aUCCgUGCcccccucccccCGCGGGAGGCUCAAUCGg -3'
miRNA:   3'- -AGGgACGuu---------GUGUCCUCCGGGUUAGU- -5'
33361 5' -55.6 NC_007605.1 + 121260 0.71 0.684038
Target:  5'- gCCCUGCAGCuuucuGCAGGAGGCauuCCccgCAc -3'
miRNA:   3'- aGGGACGUUG-----UGUCCUCCG---GGuuaGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.