Results 1 - 20 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33361 | 5' | -55.6 | NC_007605.1 | + | 165110 | 0.66 | 0.925376 |
Target: 5'- gCCUggccgGCGgccACACAGGAGGCCa----- -3' miRNA: 3'- aGGGa----CGU---UGUGUCCUCCGGguuagu -5' |
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33361 | 5' | -55.6 | NC_007605.1 | + | 164115 | 0.72 | 0.62241 |
Target: 5'- gCUCUGC---ACAGGAGGCCCGAc-- -3' miRNA: 3'- aGGGACGuugUGUCCUCCGGGUUagu -5' |
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33361 | 5' | -55.6 | NC_007605.1 | + | 145430 | 0.67 | 0.874369 |
Target: 5'- gUCCCaaaUGUcaccacagAACACAGGGGGCUgGAUUu -3' miRNA: 3'- -AGGG---ACG--------UUGUGUCCUCCGGgUUAGu -5' |
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33361 | 5' | -55.6 | NC_007605.1 | + | 143353 | 0.66 | 0.930678 |
Target: 5'- gUCCCUGCcuGGCAcCAGGGuccGGCCUGGg-- -3' miRNA: 3'- -AGGGACG--UUGU-GUCCU---CCGGGUUagu -5' |
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33361 | 5' | -55.6 | NC_007605.1 | + | 133752 | 0.66 | 0.922078 |
Target: 5'- cUCCCUGCcuCACGGGaAgagcugcuggagcugGGCCCGGa-- -3' miRNA: 3'- -AGGGACGuuGUGUCC-U---------------CCGGGUUagu -5' |
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33361 | 5' | -55.6 | NC_007605.1 | + | 132290 | 0.68 | 0.851513 |
Target: 5'- aCCCUGCc---CAGGGGaGCCCAGcCAc -3' miRNA: 3'- aGGGACGuuguGUCCUC-CGGGUUaGU- -5' |
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33361 | 5' | -55.6 | NC_007605.1 | + | 126301 | 0.66 | 0.901754 |
Target: 5'- uUCCCUu---CGCAGGAGGgccaCCAGUCu -3' miRNA: 3'- -AGGGAcguuGUGUCCUCCg---GGUUAGu -5' |
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33361 | 5' | -55.6 | NC_007605.1 | + | 125621 | 0.68 | 0.818255 |
Target: 5'- gCCCUuCAGCggGCGGGAGGCCagacUCAa -3' miRNA: 3'- aGGGAcGUUG--UGUCCUCCGGguu-AGU- -5' |
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33361 | 5' | -55.6 | NC_007605.1 | + | 123766 | 1.08 | 0.003304 |
Target: 5'- cUCCCUGCAACACAGGAGGCCCAAUCAc -3' miRNA: 3'- -AGGGACGUUGUGUCCUCCGGGUUAGU- -5' |
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33361 | 5' | -55.6 | NC_007605.1 | + | 121260 | 0.71 | 0.684038 |
Target: 5'- gCCCUGCAGCuuucuGCAGGAGGCauuCCccgCAc -3' miRNA: 3'- aGGGACGUUG-----UGUCCUCCG---GGuuaGU- -5' |
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33361 | 5' | -55.6 | NC_007605.1 | + | 116567 | 0.74 | 0.528929 |
Target: 5'- aUCCgUGCcccccucccccCGCGGGAGGCUCAAUCGg -3' miRNA: 3'- -AGGgACGuu---------GUGUCCUCCGGGUUAGU- -5' |
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33361 | 5' | -55.6 | NC_007605.1 | + | 112166 | 0.7 | 0.743111 |
Target: 5'- aCgCUGCGGCACGGGgcaaaagGGGCCCuauUCu -3' miRNA: 3'- aGgGACGUUGUGUCC-------UCCGGGuu-AGu -5' |
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33361 | 5' | -55.6 | NC_007605.1 | + | 107027 | 0.69 | 0.809493 |
Target: 5'- -gCCUGCGGCG-AGGuGGCgCUAAUCAa -3' miRNA: 3'- agGGACGUUGUgUCCuCCG-GGUUAGU- -5' |
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33361 | 5' | -55.6 | NC_007605.1 | + | 105574 | 0.66 | 0.914045 |
Target: 5'- gCCCUGaCcGCGCGucGAGGCCCAGg-- -3' miRNA: 3'- aGGGAC-GuUGUGUc-CUCCGGGUUagu -5' |
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33361 | 5' | -55.6 | NC_007605.1 | + | 98577 | 0.7 | 0.753805 |
Target: 5'- ----aGCAACACccccuGGGAGGCCCAcgCGu -3' miRNA: 3'- agggaCGUUGUG-----UCCUCCGGGUuaGU- -5' |
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33361 | 5' | -55.6 | NC_007605.1 | + | 92080 | 0.67 | 0.866962 |
Target: 5'- gUCCgGCGugGCuggaguAGGAGGCCCGGggCAg -3' miRNA: 3'- aGGGaCGUugUG------UCCUCCGGGUUa-GU- -5' |
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33361 | 5' | -55.6 | NC_007605.1 | + | 88070 | 0.73 | 0.550931 |
Target: 5'- gCCCcGCG--GCAGGAGGCCCAG-CGg -3' miRNA: 3'- aGGGaCGUugUGUCCUCCGGGUUaGU- -5' |
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33361 | 5' | -55.6 | NC_007605.1 | + | 88025 | 0.73 | 0.590559 |
Target: 5'- gCCCcGCGGCaggaggccccgcgGCAGGAGGCCCGcggCAg -3' miRNA: 3'- aGGGaCGUUG-------------UGUCCUCCGGGUua-GU- -5' |
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33361 | 5' | -55.6 | NC_007605.1 | + | 87981 | 0.69 | 0.791488 |
Target: 5'- gCCCcGCG--GCAGGAGGCCCcg-CGg -3' miRNA: 3'- aGGGaCGUugUGUCCUCCGGGuuaGU- -5' |
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33361 | 5' | -55.6 | NC_007605.1 | + | 87951 | 0.77 | 0.350243 |
Target: 5'- gCCCcGCGGCaggaggccccacgGCAGGAGGCCCAGUa- -3' miRNA: 3'- aGGGaCGUUG-------------UGUCCUCCGGGUUAgu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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