miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33361 5' -55.6 NC_007605.1 + 92080 0.67 0.866962
Target:  5'- gUCCgGCGugGCuggaguAGGAGGCCCGGggCAg -3'
miRNA:   3'- aGGGaCGUugUG------UCCUCCGGGUUa-GU- -5'
33361 5' -55.6 NC_007605.1 + 145430 0.67 0.874369
Target:  5'- gUCCCaaaUGUcaccacagAACACAGGGGGCUgGAUUu -3'
miRNA:   3'- -AGGG---ACG--------UUGUGUCCUCCGGgUUAGu -5'
33361 5' -55.6 NC_007605.1 + 60240 0.67 0.895252
Target:  5'- cUCCCUGagggcCGGCAcCAGGAGGCgCCu-UCu -3'
miRNA:   3'- -AGGGAC-----GUUGU-GUCCUCCG-GGuuAGu -5'
33361 5' -55.6 NC_007605.1 + 98577 0.7 0.753805
Target:  5'- ----aGCAACACccccuGGGAGGCCCAcgCGu -3'
miRNA:   3'- agggaCGUUGUG-----UCCUCCGGGUuaGU- -5'
33361 5' -55.6 NC_007605.1 + 68014 0.69 0.782263
Target:  5'- cUCCUUGCccagGACACAGGuGcGCCCGuaggCAa -3'
miRNA:   3'- -AGGGACG----UUGUGUCCuC-CGGGUua--GU- -5'
33361 5' -55.6 NC_007605.1 + 87981 0.69 0.791488
Target:  5'- gCCCcGCG--GCAGGAGGCCCcg-CGg -3'
miRNA:   3'- aGGGaCGUugUGUCCUCCGGGuuaGU- -5'
33361 5' -55.6 NC_007605.1 + 63241 0.69 0.795138
Target:  5'- gCCCUGCGcgccagacggccgccGCACucagcgAGGAGGCCUGcgCGu -3'
miRNA:   3'- aGGGACGU---------------UGUG------UCCUCCGGGUuaGU- -5'
33361 5' -55.6 NC_007605.1 + 9629 0.68 0.851513
Target:  5'- gCCCUGUuccacauguGACACGGGGGGggaCCAAaCAc -3'
miRNA:   3'- aGGGACG---------UUGUGUCCUCCg--GGUUaGU- -5'
33361 5' -55.6 NC_007605.1 + 132290 0.68 0.851513
Target:  5'- aCCCUGCc---CAGGGGaGCCCAGcCAc -3'
miRNA:   3'- aGGGACGuuguGUCCUC-CGGGUUaGU- -5'
33361 5' -55.6 NC_007605.1 + 43000 0.67 0.859342
Target:  5'- aUCUgCUGCAACAgAauuuaaaaguGGGGGCCgGGUCAu -3'
miRNA:   3'- -AGG-GACGUUGUgU----------CCUCCGGgUUAGU- -5'
33361 5' -55.6 NC_007605.1 + 58881 0.7 0.744089
Target:  5'- gUCCUGCAcggcaguuACaACGGGGuGGCCCAGUUc -3'
miRNA:   3'- aGGGACGU--------UG-UGUCCU-CCGGGUUAGu -5'
33361 5' -55.6 NC_007605.1 + 112166 0.7 0.743111
Target:  5'- aCgCUGCGGCACGGGgcaaaagGGGCCCuauUCu -3'
miRNA:   3'- aGgGACGUUGUGUCC-------UCCGGGuu-AGu -5'
33361 5' -55.6 NC_007605.1 + 58704 0.7 0.724369
Target:  5'- aUCCUGCAguacguggggGCAcCAGG-GGCCCAGUaCAc -3'
miRNA:   3'- aGGGACGU----------UGU-GUCCuCCGGGUUA-GU- -5'
33361 5' -55.6 NC_007605.1 + 121260 0.71 0.684038
Target:  5'- gCCCUGCAGCuuucuGCAGGAGGCauuCCccgCAc -3'
miRNA:   3'- aGGGACGUUG-----UGUCCUCCG---GGuuaGU- -5'
33361 5' -55.6 NC_007605.1 + 30121 0.71 0.653301
Target:  5'- cCUCUGgccCGAUACGGGGGGCCCGGg-- -3'
miRNA:   3'- aGGGAC---GUUGUGUCCUCCGGGUUagu -5'
33361 5' -55.6 NC_007605.1 + 164115 0.72 0.62241
Target:  5'- gCUCUGC---ACAGGAGGCCCGAc-- -3'
miRNA:   3'- aGGGACGuugUGUCCUCCGGGUUagu -5'
33361 5' -55.6 NC_007605.1 + 88025 0.73 0.590559
Target:  5'- gCCCcGCGGCaggaggccccgcgGCAGGAGGCCCGcggCAg -3'
miRNA:   3'- aGGGaCGUUG-------------UGUCCUCCGGGUua-GU- -5'
33361 5' -55.6 NC_007605.1 + 88070 0.73 0.550931
Target:  5'- gCCCcGCG--GCAGGAGGCCCAG-CGg -3'
miRNA:   3'- aGGGaCGUugUGUCCUCCGGGUUaGU- -5'
33361 5' -55.6 NC_007605.1 + 87951 0.77 0.350243
Target:  5'- gCCCcGCGGCaggaggccccacgGCAGGAGGCCCAGUa- -3'
miRNA:   3'- aGGGaCGUUG-------------UGUCCUCCGGGUUAgu -5'
33361 5' -55.6 NC_007605.1 + 40538 0.66 0.930678
Target:  5'- gUCCCUGCcuGGCAcCAGGGuccGGCCUGGg-- -3'
miRNA:   3'- -AGGGACG--UUGU-GUCCU---CCGGGUUagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.