Results 21 - 40 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33361 | 5' | -55.6 | NC_007605.1 | + | 87981 | 0.69 | 0.791488 |
Target: 5'- gCCCcGCG--GCAGGAGGCCCcg-CGg -3' miRNA: 3'- aGGGaCGUugUGUCCUCCGGGuuaGU- -5' |
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33361 | 5' | -55.6 | NC_007605.1 | + | 143353 | 0.66 | 0.930678 |
Target: 5'- gUCCCUGCcuGGCAcCAGGGuccGGCCUGGg-- -3' miRNA: 3'- -AGGGACG--UUGU-GUCCU---CCGGGUUagu -5' |
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33361 | 5' | -55.6 | NC_007605.1 | + | 74890 | 0.66 | 0.901754 |
Target: 5'- -aCCUGC-ACACcaggGGGcAGGCCCAGaUCu -3' miRNA: 3'- agGGACGuUGUG----UCC-UCCGGGUU-AGu -5' |
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33361 | 5' | -55.6 | NC_007605.1 | + | 126301 | 0.66 | 0.901754 |
Target: 5'- uUCCCUu---CGCAGGAGGgccaCCAGUCu -3' miRNA: 3'- -AGGGAcguuGUGUCCUCCg---GGUUAGu -5' |
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33361 | 5' | -55.6 | NC_007605.1 | + | 165110 | 0.66 | 0.925376 |
Target: 5'- gCCUggccgGCGgccACACAGGAGGCCa----- -3' miRNA: 3'- aGGGa----CGU---UGUGUCCUCCGGguuagu -5' |
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33361 | 5' | -55.6 | NC_007605.1 | + | 10765 | 0.67 | 0.895252 |
Target: 5'- gCCCUGCAAgGCcuG-GGCCCGGg-- -3' miRNA: 3'- aGGGACGUUgUGucCuCCGGGUUagu -5' |
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33361 | 5' | -55.6 | NC_007605.1 | + | 75578 | 0.69 | 0.809493 |
Target: 5'- aCCCUGCAugGCc--AGGCCCGAc-- -3' miRNA: 3'- aGGGACGUugUGuccUCCGGGUUagu -5' |
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33361 | 5' | -55.6 | NC_007605.1 | + | 60873 | 0.68 | 0.818255 |
Target: 5'- cUCCCcgGCAuCGgAGG-GGCCCcGUCAu -3' miRNA: 3'- -AGGGa-CGUuGUgUCCuCCGGGuUAGU- -5' |
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33361 | 5' | -55.6 | NC_007605.1 | + | 72910 | 0.68 | 0.851513 |
Target: 5'- aCCCagGCGGCGCAuGAGGCgCAGUa- -3' miRNA: 3'- aGGGa-CGUUGUGUcCUCCGgGUUAgu -5' |
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33361 | 5' | -55.6 | NC_007605.1 | + | 125621 | 0.68 | 0.818255 |
Target: 5'- gCCCUuCAGCggGCGGGAGGCCagacUCAa -3' miRNA: 3'- aGGGAcGUUG--UGUCCUCCGGguu-AGU- -5' |
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33361 | 5' | -55.6 | NC_007605.1 | + | 60240 | 0.67 | 0.895252 |
Target: 5'- cUCCCUGagggcCGGCAcCAGGAGGCgCCu-UCu -3' miRNA: 3'- -AGGGAC-----GUUGU-GUCCUCCG-GGuuAGu -5' |
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33361 | 5' | -55.6 | NC_007605.1 | + | 67040 | 0.66 | 0.901754 |
Target: 5'- gCCCUGCu--GCGGGuccgGGGCCUAAUg- -3' miRNA: 3'- aGGGACGuugUGUCC----UCCGGGUUAgu -5' |
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33361 | 5' | -55.6 | NC_007605.1 | + | 25293 | 0.66 | 0.925376 |
Target: 5'- cCCCgGCAGCcCGGGcGGCCCc---- -3' miRNA: 3'- aGGGaCGUUGuGUCCuCCGGGuuagu -5' |
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33361 | 5' | -55.6 | NC_007605.1 | + | 31431 | 0.66 | 0.925376 |
Target: 5'- cCCCgGCAGCcCGGGcGGCCCc---- -3' miRNA: 3'- aGGGaCGUUGuGUCCuCCGGGuuagu -5' |
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33361 | 5' | -55.6 | NC_007605.1 | + | 34500 | 0.66 | 0.925376 |
Target: 5'- cCCCgGCAGCcCGGGcGGCCCc---- -3' miRNA: 3'- aGGGaCGUUGuGUCCuCCGGGuuagu -5' |
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33361 | 5' | -55.6 | NC_007605.1 | + | 64472 | 0.66 | 0.925376 |
Target: 5'- gCCCUGCA--GCGGGccAGGCCgGAg-- -3' miRNA: 3'- aGGGACGUugUGUCC--UCCGGgUUagu -5' |
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33361 | 5' | -55.6 | NC_007605.1 | + | 28362 | 0.66 | 0.925376 |
Target: 5'- cCCCgGCAGCcCGGGcGGCCCc---- -3' miRNA: 3'- aGGGaCGUUGuGUCCuCCGGGuuagu -5' |
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33361 | 5' | -55.6 | NC_007605.1 | + | 133752 | 0.66 | 0.922078 |
Target: 5'- cUCCCUGCcuCACGGGaAgagcugcuggagcugGGCCCGGa-- -3' miRNA: 3'- -AGGGACGuuGUGUCC-U---------------CCGGGUUagu -5' |
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33361 | 5' | -55.6 | NC_007605.1 | + | 105574 | 0.66 | 0.914045 |
Target: 5'- gCCCUGaCcGCGCGucGAGGCCCAGg-- -3' miRNA: 3'- aGGGAC-GuUGUGUc-CUCCGGGUUagu -5' |
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33361 | 5' | -55.6 | NC_007605.1 | + | 74832 | 0.66 | 0.914045 |
Target: 5'- gUCCCUGagAGCugucguggguGguGGAGGCCCAGg-- -3' miRNA: 3'- -AGGGACg-UUG----------UguCCUCCGGGUUagu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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