Results 41 - 49 of 49 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
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Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 33361 | 5' | -55.6 | NC_007605.1 | + | 25293 | 0.66 | 0.925376 |
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Target: 5'- cCCCgGCAGCcCGGGcGGCCCc---- -3' miRNA: 3'- aGGGaCGUUGuGUCCuCCGGGuuagu -5' |
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| 33361 | 5' | -55.6 | NC_007605.1 | + | 19155 | 0.66 | 0.925376 |
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Target: 5'- cCCCgGCAGCcCGGGcGGCCCc---- -3' miRNA: 3'- aGGGaCGUUGuGUCCuCCGGGuuagu -5' |
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| 33361 | 5' | -55.6 | NC_007605.1 | + | 22224 | 0.66 | 0.925376 |
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Target: 5'- cCCCgGCAGCcCGGGcGGCCCc---- -3' miRNA: 3'- aGGGaCGUUGuGUCCuCCGGGuuagu -5' |
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| 33361 | 5' | -55.6 | NC_007605.1 | + | 16086 | 0.66 | 0.925376 |
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Target: 5'- cCCCgGCAGCcCGGGcGGCCCc---- -3' miRNA: 3'- aGGGaCGUUGuGUCCuCCGGGuuagu -5' |
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| 33361 | 5' | -55.6 | NC_007605.1 | + | 13017 | 0.66 | 0.925376 |
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Target: 5'- cCCCgGCAGCcCGGGcGGCCCc---- -3' miRNA: 3'- aGGGaCGUUGuGUCCuCCGGGuuagu -5' |
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| 33361 | 5' | -55.6 | NC_007605.1 | + | 64472 | 0.66 | 0.925376 |
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Target: 5'- gCCCUGCA--GCGGGccAGGCCgGAg-- -3' miRNA: 3'- aGGGACGUugUGUCC--UCCGGgUUagu -5' |
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| 33361 | 5' | -55.6 | NC_007605.1 | + | 133752 | 0.66 | 0.922078 |
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Target: 5'- cUCCCUGCcuCACGGGaAgagcugcuggagcugGGCCCGGa-- -3' miRNA: 3'- -AGGGACGuuGUGUCC-U---------------CCGGGUUagu -5' |
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| 33361 | 5' | -55.6 | NC_007605.1 | + | 105574 | 0.66 | 0.914045 |
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Target: 5'- gCCCUGaCcGCGCGucGAGGCCCAGg-- -3' miRNA: 3'- aGGGAC-GuUGUGUc-CUCCGGGUUagu -5' |
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| 33361 | 5' | -55.6 | NC_007605.1 | + | 116567 | 0.74 | 0.528929 |
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Target: 5'- aUCCgUGCcccccucccccCGCGGGAGGCUCAAUCGg -3' miRNA: 3'- -AGGgACGuu---------GUGUCCUCCGGGUUAGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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