miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33366 3' -53.9 NC_007605.1 + 41647 0.66 0.979616
Target:  5'- gUCUC-CGGGUGgGCAgGcAgUACGAGa -3'
miRNA:   3'- -GGAGaGCCUACgCGUgC-UgAUGCUCc -5'
33366 3' -53.9 NC_007605.1 + 49576 0.66 0.979616
Target:  5'- gCCUC-CGG--GC-CGCGACUuCGGGGg -3'
miRNA:   3'- -GGAGaGCCuaCGcGUGCUGAuGCUCC- -5'
33366 3' -53.9 NC_007605.1 + 19499 0.67 0.969451
Target:  5'- -gUCUCGGugGgGCugGACU-UGAGGg -3'
miRNA:   3'- ggAGAGCCuaCgCGugCUGAuGCUCC- -5'
33366 3' -53.9 NC_007605.1 + 138128 0.67 0.969451
Target:  5'- gUCUCUCGGAUcgaGUugGGC--CGGGGa -3'
miRNA:   3'- -GGAGAGCCUAcg-CGugCUGauGCUCC- -5'
33366 3' -53.9 NC_007605.1 + 34844 0.67 0.969451
Target:  5'- -gUCUCGGugGgGCugGACU-UGAGGg -3'
miRNA:   3'- ggAGAGCCuaCgCGugCUGAuGCUCC- -5'
33366 3' -53.9 NC_007605.1 + 31775 0.67 0.969451
Target:  5'- -gUCUCGGugGgGCugGACU-UGAGGg -3'
miRNA:   3'- ggAGAGCCuaCgCGugCUGAuGCUCC- -5'
33366 3' -53.9 NC_007605.1 + 28706 0.67 0.969451
Target:  5'- -gUCUCGGugGgGCugGACU-UGAGGg -3'
miRNA:   3'- ggAGAGCCuaCgCGugCUGAuGCUCC- -5'
33366 3' -53.9 NC_007605.1 + 13361 0.67 0.969451
Target:  5'- -gUCUCGGugGgGCugGACU-UGAGGg -3'
miRNA:   3'- ggAGAGCCuaCgCGugCUGAuGCUCC- -5'
33366 3' -53.9 NC_007605.1 + 16430 0.67 0.969451
Target:  5'- -gUCUCGGugGgGCugGACU-UGAGGg -3'
miRNA:   3'- ggAGAGCCuaCgCGugCUGAuGCUCC- -5'
33366 3' -53.9 NC_007605.1 + 25637 0.67 0.969451
Target:  5'- -gUCUCGGugGgGCugGACU-UGAGGg -3'
miRNA:   3'- ggAGAGCCuaCgCGugCUGAuGCUCC- -5'
33366 3' -53.9 NC_007605.1 + 22568 0.67 0.969451
Target:  5'- -gUCUCGGugGgGCugGACU-UGAGGg -3'
miRNA:   3'- ggAGAGCCuaCgCGugCUGAuGCUCC- -5'
33366 3' -53.9 NC_007605.1 + 159464 0.67 0.968566
Target:  5'- uCgUCUCGGGUcccugggaggacagGCGCGCcg--GCGAGGg -3'
miRNA:   3'- -GgAGAGCCUA--------------CGCGUGcugaUGCUCC- -5'
33366 3' -53.9 NC_007605.1 + 6608 0.67 0.966114
Target:  5'- cCCUCUCuGGGaacccGUGUugGgagccccGCUGCGGGGa -3'
miRNA:   3'- -GGAGAG-CCUa----CGCGugC-------UGAUGCUCC- -5'
33366 3' -53.9 NC_007605.1 + 63840 0.68 0.939257
Target:  5'- ---aUCGGcgGgGCACGGCUGC-AGGc -3'
miRNA:   3'- ggagAGCCuaCgCGUGCUGAUGcUCC- -5'
33366 3' -53.9 NC_007605.1 + 112747 0.68 0.934474
Target:  5'- gUUCUCGGucagacgGC-CGCG-CUGCGAGGc -3'
miRNA:   3'- gGAGAGCCua-----CGcGUGCuGAUGCUCC- -5'
33366 3' -53.9 NC_007605.1 + 52242 0.68 0.934474
Target:  5'- --cCUCGGggGCgaaGCAcCGGCgUGCGAGGa -3'
miRNA:   3'- ggaGAGCCuaCG---CGU-GCUG-AUGCUCC- -5'
33366 3' -53.9 NC_007605.1 + 155104 0.69 0.907081
Target:  5'- gCCUCUCuGGGcaaaauuagggcUGgGgGCGuCUGCGAGGu -3'
miRNA:   3'- -GGAGAG-CCU------------ACgCgUGCuGAUGCUCC- -5'
33366 3' -53.9 NC_007605.1 + 126983 0.7 0.86674
Target:  5'- gCCUCUC-GAUGCGuCACGAUg--GGGGu -3'
miRNA:   3'- -GGAGAGcCUACGC-GUGCUGaugCUCC- -5'
33366 3' -53.9 NC_007605.1 + 60721 0.72 0.7929
Target:  5'- cCCUCUCGGAggacaucucGCGCuugACGggggcaGCUugGAGGc -3'
miRNA:   3'- -GGAGAGCCUa--------CGCG---UGC------UGAugCUCC- -5'
33366 3' -53.9 NC_007605.1 + 97986 0.72 0.7929
Target:  5'- aCCUCUggcUGGAUGaGCACGugUGgaaGAGGa -3'
miRNA:   3'- -GGAGA---GCCUACgCGUGCugAUg--CUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.