miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33366 5' -61.6 NC_007605.1 + 25190 0.66 0.709455
Target:  5'- gCugGCCGagacccgGGUCUgggGGGCcuGUGGUGGUg -3'
miRNA:   3'- -GugCGGCa------CCGGGa--CUCG--UACCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 31328 0.66 0.709455
Target:  5'- gCugGCCGagacccgGGUCUgggGGGCcuGUGGUGGUg -3'
miRNA:   3'- -GugCGGCa------CCGGGa--CUCG--UACCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 15984 0.66 0.709455
Target:  5'- gCugGCCGagacccgGGUCUgggGGGCcuGUGGUGGUg -3'
miRNA:   3'- -GugCGGCa------CCGGGa--CUCG--UACCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 22122 0.66 0.709455
Target:  5'- gCugGCCGagacccgGGUCUgggGGGCcuGUGGUGGUg -3'
miRNA:   3'- -GugCGGCa------CCGGGa--CUCG--UACCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 34397 0.66 0.709455
Target:  5'- gCugGCCGagacccgGGUCUgggGGGCcuGUGGUGGUg -3'
miRNA:   3'- -GugCGGCa------CCGGGa--CUCG--UACCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 61719 0.66 0.709455
Target:  5'- -uCGCCcguGUGGCCC-GGGCGgccuaccugcgGGCGGa -3'
miRNA:   3'- guGCGG---CACCGGGaCUCGUa----------CCGCCg -5'
33366 5' -61.6 NC_007605.1 + 72017 0.66 0.709455
Target:  5'- --gGCCGgGGCCgUgGAGCcgGG-GGCa -3'
miRNA:   3'- gugCGGCaCCGGgA-CUCGuaCCgCCG- -5'
33366 5' -61.6 NC_007605.1 + 28259 0.66 0.709455
Target:  5'- gCugGCCGagacccgGGUCUgggGGGCcuGUGGUGGUg -3'
miRNA:   3'- -GugCGGCa------CCGGGa--CUCG--UACCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 12915 0.66 0.709455
Target:  5'- gCugGCCGagacccgGGUCUgggGGGCcuGUGGUGGUg -3'
miRNA:   3'- -GugCGGCa------CCGGGa--CUCG--UACCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 19053 0.66 0.709455
Target:  5'- gCugGCCGagacccgGGUCUgggGGGCcuGUGGUGGUg -3'
miRNA:   3'- -GugCGGCa------CCGGGa--CUCG--UACCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 39015 0.66 0.708496
Target:  5'- gGCaGCCGgGGuUCCUGgcgcuccgggggcAGCcgGGCGGCc -3'
miRNA:   3'- gUG-CGGCaCC-GGGAC-------------UCGuaCCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 39515 0.66 0.708496
Target:  5'- gGCaGCCGgGGuUCCUGgcgcuccgggggcAGCcgGGCGGCc -3'
miRNA:   3'- gUG-CGGCaCC-GGGAC-------------UCGuaCCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 38266 0.66 0.708496
Target:  5'- gGCaGCCGgGGuUCCUGgcgcuccgggggcAGCcgGGCGGCc -3'
miRNA:   3'- gUG-CGGCaCC-GGGAC-------------UCGuaCCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 38766 0.66 0.708496
Target:  5'- gGCaGCCGgGGuUCCUGgcgcuccgggggcAGCcgGGCGGCc -3'
miRNA:   3'- gUG-CGGCaCC-GGGAC-------------UCGuaCCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 38641 0.66 0.708496
Target:  5'- gGCaGCCGgGGuUCCUGgcgcuccgggggcAGCcgGGCGGCc -3'
miRNA:   3'- gUG-CGGCaCC-GGGAC-------------UCGuaCCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 39265 0.66 0.708496
Target:  5'- gGCaGCCGgGGuUCCUGgcgcuccgggggcAGCcgGGCGGCc -3'
miRNA:   3'- gUG-CGGCaCC-GGGAC-------------UCGuaCCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 39390 0.66 0.708496
Target:  5'- gGCaGCCGgGGuUCCUGgcgcuccgggggcAGCcgGGCGGCc -3'
miRNA:   3'- gUG-CGGCaCC-GGGAC-------------UCGuaCCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 39640 0.66 0.708496
Target:  5'- gGCaGCCGgGGuUCCUGgcgcuccgggggcAGCcgGGCGGCc -3'
miRNA:   3'- gUG-CGGCaCC-GGGAC-------------UCGuaCCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 39140 0.66 0.708496
Target:  5'- gGCaGCCGgGGuUCCUGgcgcuccgggggcAGCcgGGCGGCc -3'
miRNA:   3'- gUG-CGGCaCC-GGGAC-------------UCGuaCCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 38516 0.66 0.708496
Target:  5'- gGCaGCCGgGGuUCCUGgcgcuccgggggcAGCcgGGCGGCc -3'
miRNA:   3'- gUG-CGGCaCC-GGGAC-------------UCGuaCCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.