miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33366 5' -61.6 NC_007605.1 + 38516 0.66 0.708496
Target:  5'- gGCaGCCGgGGuUCCUGgcgcuccgggggcAGCcgGGCGGCc -3'
miRNA:   3'- gUG-CGGCaCC-GGGAC-------------UCGuaCCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 61734 0.66 0.699839
Target:  5'- ---aCCGUGGCCaccuGCucgAUGGCGGCu -3'
miRNA:   3'- gugcGGCACCGGgacuCG---UACCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 47523 0.66 0.690171
Target:  5'- uCACgGCCGUGGCCCUGcuccugauGUuucugaGGUGGa -3'
miRNA:   3'- -GUG-CGGCACCGGGACu-------CGua----CCGCCg -5'
33366 5' -61.6 NC_007605.1 + 38266 0.66 0.708496
Target:  5'- gGCaGCCGgGGuUCCUGgcgcuccgggggcAGCcgGGCGGCc -3'
miRNA:   3'- gUG-CGGCaCC-GGGAC-------------UCGuaCCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 56213 0.66 0.670709
Target:  5'- cCACGuuGUGGaCaaagggGGGCAcugaGGCGGCg -3'
miRNA:   3'- -GUGCggCACCgGga----CUCGUa---CCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 39140 0.66 0.708496
Target:  5'- gGCaGCCGgGGuUCCUGgcgcuccgggggcAGCcgGGCGGCc -3'
miRNA:   3'- gUG-CGGCaCC-GGGAC-------------UCGuaCCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 39015 0.66 0.708496
Target:  5'- gGCaGCCGgGGuUCCUGgcgcuccgggggcAGCcgGGCGGCc -3'
miRNA:   3'- gUG-CGGCaCC-GGGAC-------------UCGuaCCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 39515 0.66 0.708496
Target:  5'- gGCaGCCGgGGuUCCUGgcgcuccgggggcAGCcgGGCGGCc -3'
miRNA:   3'- gUG-CGGCaCC-GGGAC-------------UCGuaCCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 39390 0.66 0.708496
Target:  5'- gGCaGCCGgGGuUCCUGgcgcuccgggggcAGCcgGGCGGCc -3'
miRNA:   3'- gUG-CGGCaCC-GGGAC-------------UCGuaCCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 1761 0.66 0.699839
Target:  5'- aAUGCCGguuGCCC--GGUAUGGgGGCc -3'
miRNA:   3'- gUGCGGCac-CGGGacUCGUACCgCCG- -5'
33366 5' -61.6 NC_007605.1 + 48465 0.66 0.680458
Target:  5'- gGgGCCGgggGGCCCugccUGAGCcgGGauguuuucgUGGCg -3'
miRNA:   3'- gUgCGGCa--CCGGG----ACUCGuaCC---------GCCG- -5'
33366 5' -61.6 NC_007605.1 + 38766 0.66 0.708496
Target:  5'- gGCaGCCGgGGuUCCUGgcgcuccgggggcAGCcgGGCGGCc -3'
miRNA:   3'- gUG-CGGCaCC-GGGAC-------------UCGuaCCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 63378 0.66 0.679485
Target:  5'- cCugGCUGaccUGGUCCcggacuuUGGGCGgcUGGUGGCc -3'
miRNA:   3'- -GugCGGC---ACCGGG-------ACUCGU--ACCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 12915 0.66 0.709455
Target:  5'- gCugGCCGagacccgGGUCUgggGGGCcuGUGGUGGUg -3'
miRNA:   3'- -GugCGGCa------CCGGGa--CUCG--UACCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 38391 0.66 0.708496
Target:  5'- gGCaGCCGgGGuUCCUGgcgcuccgggggcAGCcgGGCGGCc -3'
miRNA:   3'- gUG-CGGCaCC-GGGAC-------------UCGuaCCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 53822 0.66 0.699839
Target:  5'- --aGCCGUucccGGCCgCUGcccgGGCcagGGCGGCc -3'
miRNA:   3'- gugCGGCA----CCGG-GAC----UCGua-CCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 39265 0.66 0.708496
Target:  5'- gGCaGCCGgGGuUCCUGgcgcuccgggggcAGCcgGGCGGCc -3'
miRNA:   3'- gUG-CGGCaCC-GGGAC-------------UCGuaCCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 38641 0.66 0.708496
Target:  5'- gGCaGCCGgGGuUCCUGgcgcuccgggggcAGCcgGGCGGCc -3'
miRNA:   3'- gUG-CGGCaCC-GGGAC-------------UCGuaCCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 120231 0.66 0.690171
Target:  5'- gGCGCauacUGGCCCUGGGCAgcagGGUc-- -3'
miRNA:   3'- gUGCGgc--ACCGGGACUCGUa---CCGccg -5'
33366 5' -61.6 NC_007605.1 + 52879 0.66 0.66093
Target:  5'- gGCGgCGgcGGCgCUGGGCG-GGCGGa -3'
miRNA:   3'- gUGCgGCa-CCGgGACUCGUaCCGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.