miRNA display CGI


Results 21 - 40 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33366 5' -61.6 NC_007605.1 + 39515 0.66 0.708496
Target:  5'- gGCaGCCGgGGuUCCUGgcgcuccgggggcAGCcgGGCGGCc -3'
miRNA:   3'- gUG-CGGCaCC-GGGAC-------------UCGuaCCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 39140 0.66 0.708496
Target:  5'- gGCaGCCGgGGuUCCUGgcgcuccgggggcAGCcgGGCGGCc -3'
miRNA:   3'- gUG-CGGCaCC-GGGAC-------------UCGuaCCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 26028 0.66 0.690171
Target:  5'- gAgGCUG-GGCCCggGAGCcGUGGacgGGCg -3'
miRNA:   3'- gUgCGGCaCCGGGa-CUCG-UACCg--CCG- -5'
33366 5' -61.6 NC_007605.1 + 13752 0.66 0.690171
Target:  5'- gAgGCUG-GGCCCggGAGCcGUGGacgGGCg -3'
miRNA:   3'- gUgCGGCaCCGGGa-CUCG-UACCg--CCG- -5'
33366 5' -61.6 NC_007605.1 + 32165 0.66 0.690171
Target:  5'- gAgGCUG-GGCCCggGAGCcGUGGacgGGCg -3'
miRNA:   3'- gUgCGGCaCCGGGa-CUCG-UACCg--CCG- -5'
33366 5' -61.6 NC_007605.1 + 62341 0.66 0.66093
Target:  5'- --gGCCGUGGagCUggugGAGCAcagUGGgGGCg -3'
miRNA:   3'- gugCGGCACCg-GGa---CUCGU---ACCgCCG- -5'
33366 5' -61.6 NC_007605.1 + 160196 0.66 0.690171
Target:  5'- gGCGCgGUcccgGGCCCgGGGCGgccGGaGGCa -3'
miRNA:   3'- gUGCGgCA----CCGGGaCUCGUa--CCgCCG- -5'
33366 5' -61.6 NC_007605.1 + 94371 0.66 0.66093
Target:  5'- uGgGCCGUGGUUaaGGccuGCAcGGCGGCu -3'
miRNA:   3'- gUgCGGCACCGGgaCU---CGUaCCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 134358 0.66 0.670709
Target:  5'- gACGCCGggUGGCcgCCUcGGCcagguUGGCGGUc -3'
miRNA:   3'- gUGCGGC--ACCG--GGAcUCGu----ACCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 50594 0.66 0.670709
Target:  5'- -gUGCCaaaGGCCacggGGGCGcUGGCGGCc -3'
miRNA:   3'- guGCGGca-CCGGga--CUCGU-ACCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 35234 0.66 0.690171
Target:  5'- gAgGCUG-GGCCCggGAGCcGUGGacgGGCg -3'
miRNA:   3'- gUgCGGCaCCGGGa-CUCG-UACCg--CCG- -5'
33366 5' -61.6 NC_007605.1 + 19890 0.66 0.690171
Target:  5'- gAgGCUG-GGCCCggGAGCcGUGGacgGGCg -3'
miRNA:   3'- gUgCGGCaCCGGGa-CUCG-UACCg--CCG- -5'
33366 5' -61.6 NC_007605.1 + 38641 0.66 0.708496
Target:  5'- gGCaGCCGgGGuUCCUGgcgcuccgggggcAGCcgGGCGGCc -3'
miRNA:   3'- gUG-CGGCaCC-GGGAC-------------UCGuaCCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 38266 0.66 0.708496
Target:  5'- gGCaGCCGgGGuUCCUGgcgcuccgggggcAGCcgGGCGGCc -3'
miRNA:   3'- gUG-CGGCaCC-GGGAC-------------UCGuaCCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 53822 0.66 0.699839
Target:  5'- --aGCCGUucccGGCCgCUGcccgGGCcagGGCGGCc -3'
miRNA:   3'- gugCGGCA----CCGG-GAC----UCGua-CCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 22959 0.66 0.690171
Target:  5'- gAgGCUG-GGCCCggGAGCcGUGGacgGGCg -3'
miRNA:   3'- gUgCGGCaCCGGGa-CUCG-UACCg--CCG- -5'
33366 5' -61.6 NC_007605.1 + 63378 0.66 0.679485
Target:  5'- cCugGCUGaccUGGUCCcggacuuUGGGCGgcUGGUGGCc -3'
miRNA:   3'- -GugCGGC---ACCGGG-------ACUCGU--ACCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 56213 0.66 0.670709
Target:  5'- cCACGuuGUGGaCaaagggGGGCAcugaGGCGGCg -3'
miRNA:   3'- -GUGCggCACCgGga----CUCGUa---CCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 166748 0.66 0.66093
Target:  5'- gACGuCUG-GGUCCUcgGGGCAggGGUGGCu -3'
miRNA:   3'- gUGC-GGCaCCGGGA--CUCGUa-CCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 52879 0.66 0.66093
Target:  5'- gGCGgCGgcGGCgCUGGGCG-GGCGGa -3'
miRNA:   3'- gUGCgGCa-CCGgGACUCGUaCCGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.