miRNA display CGI


Results 41 - 60 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33366 5' -61.6 NC_007605.1 + 39140 0.66 0.708496
Target:  5'- gGCaGCCGgGGuUCCUGgcgcuccgggggcAGCcgGGCGGCc -3'
miRNA:   3'- gUG-CGGCaCC-GGGAC-------------UCGuaCCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 26028 0.66 0.690171
Target:  5'- gAgGCUG-GGCCCggGAGCcGUGGacgGGCg -3'
miRNA:   3'- gUgCGGCaCCGGGa-CUCG-UACCg--CCG- -5'
33366 5' -61.6 NC_007605.1 + 29097 0.66 0.690171
Target:  5'- gAgGCUG-GGCCCggGAGCcGUGGacgGGCg -3'
miRNA:   3'- gUgCGGCaCCGGGa-CUCG-UACCg--CCG- -5'
33366 5' -61.6 NC_007605.1 + 32165 0.66 0.690171
Target:  5'- gAgGCUG-GGCCCggGAGCcGUGGacgGGCg -3'
miRNA:   3'- gUgCGGCaCCGGGa-CUCG-UACCg--CCG- -5'
33366 5' -61.6 NC_007605.1 + 160196 0.66 0.690171
Target:  5'- gGCGCgGUcccgGGCCCgGGGCGgccGGaGGCa -3'
miRNA:   3'- gUGCGgCA----CCGGGaCUCGUa--CCgCCG- -5'
33366 5' -61.6 NC_007605.1 + 50594 0.66 0.670709
Target:  5'- -gUGCCaaaGGCCacggGGGCGcUGGCGGCc -3'
miRNA:   3'- guGCGGca-CCGGga--CUCGU-ACCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 94371 0.66 0.66093
Target:  5'- uGgGCCGUGGUUaaGGccuGCAcGGCGGCu -3'
miRNA:   3'- gUgCGGCACCGGgaCU---CGUaCCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 61734 0.66 0.699839
Target:  5'- ---aCCGUGGCCaccuGCucgAUGGCGGCu -3'
miRNA:   3'- gugcGGCACCGGgacuCG---UACCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 4407 0.67 0.621677
Target:  5'- cCugGUgGagaUGGCCCUG-GCcgGGCaGCg -3'
miRNA:   3'- -GugCGgC---ACCGGGACuCGuaCCGcCG- -5'
33366 5' -61.6 NC_007605.1 + 133048 0.67 0.618732
Target:  5'- aACGCCGccaagacuuccaGGCCCUGAcugcccaGCAcggGGgGGCa -3'
miRNA:   3'- gUGCGGCa-----------CCGGGACU-------CGUa--CCgCCG- -5'
33366 5' -61.6 NC_007605.1 + 151530 0.67 0.641317
Target:  5'- -cCGCCGUGaacucuGCCCUucaGuGUcUGGCGGCc -3'
miRNA:   3'- guGCGGCAC------CGGGA---CuCGuACCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 115407 0.67 0.651131
Target:  5'- gGCGgCGgaGGCC--GAGCAgggacUGGCGGCa -3'
miRNA:   3'- gUGCgGCa-CCGGgaCUCGU-----ACCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 10200 0.67 0.651131
Target:  5'- aAC-CUGUGGCaCCUGcGCA-GGCGGa -3'
miRNA:   3'- gUGcGGCACCG-GGACuCGUaCCGCCg -5'
33366 5' -61.6 NC_007605.1 + 73603 0.67 0.631497
Target:  5'- --gGaCGUGGCCCggGAGC-UGGUGGa -3'
miRNA:   3'- gugCgGCACCGGGa-CUCGuACCGCCg -5'
33366 5' -61.6 NC_007605.1 + 136530 0.67 0.621677
Target:  5'- gACGCUGaugaGGUCCUG-GCccgcGGCGGCc -3'
miRNA:   3'- gUGCGGCa---CCGGGACuCGua--CCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 115509 0.67 0.611865
Target:  5'- aGgGCCGgGGCCgaGAcCAaGGCGGCu -3'
miRNA:   3'- gUgCGGCaCCGGgaCUcGUaCCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 77601 0.67 0.651131
Target:  5'- cUugGCUgGUGGUgCCUGGGCggGGUgcuGGCg -3'
miRNA:   3'- -GugCGG-CACCG-GGACUCGuaCCG---CCG- -5'
33366 5' -61.6 NC_007605.1 + 106121 0.67 0.641317
Target:  5'- gACuCagaGUGcCUCUGAGCAUGGgGGCa -3'
miRNA:   3'- gUGcGg--CACcGGGACUCGUACCgCCG- -5'
33366 5' -61.6 NC_007605.1 + 136548 0.67 0.615788
Target:  5'- cUACGCCG-GGCCCgcGGGCggGGacccgggugccuucuUGGCg -3'
miRNA:   3'- -GUGCGGCaCCGGGa-CUCGuaCC---------------GCCG- -5'
33366 5' -61.6 NC_007605.1 + 107408 0.67 0.625605
Target:  5'- aGCGUguuCcUGGCCCUGGGCAacagcuuuuacuuuaUGGUGGg -3'
miRNA:   3'- gUGCG---GcACCGGGACUCGU---------------ACCGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.