Results 61 - 80 of 129 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
33366 | 5' | -61.6 | NC_007605.1 | + | 136548 | 0.67 | 0.615788 |
Target: 5'- cUACGCCG-GGCCCgcGGGCggGGacccgggugccuucuUGGCg -3' miRNA: 3'- -GUGCGGCaCCGGGa-CUCGuaCC---------------GCCG- -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 4047 | 0.68 | 0.542963 |
Target: 5'- cUACGCgCGUGG-CCUGGGCGugaagcugaccuuUGGCucGGCc -3' miRNA: 3'- -GUGCG-GCACCgGGACUCGU-------------ACCG--CCG- -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 63066 | 0.68 | 0.582537 |
Target: 5'- aGgGCUGcUGGCCCcggGGGagGUGGCGGUc -3' miRNA: 3'- gUgCGGC-ACCGGGa--CUCg-UACCGCCG- -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 47266 | 0.68 | 0.553504 |
Target: 5'- gAC-CCGcgaGGCCuuCUGGGCGuUGGCGGCc -3' miRNA: 3'- gUGcGGCa--CCGG--GACUCGU-ACCGCCG- -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 54025 | 0.68 | 0.534388 |
Target: 5'- -cCGCCcUGGCCC-GGGCA--GCGGCc -3' miRNA: 3'- guGCGGcACCGGGaCUCGUacCGCCG- -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 67686 | 0.68 | 0.572819 |
Target: 5'- -cCGCCGUGGCCaacgcaGGCAcGGCcgGGCu -3' miRNA: 3'- guGCGGCACCGGgac---UCGUaCCG--CCG- -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 159723 | 0.68 | 0.582537 |
Target: 5'- cCGCuCCGUGGCCCcggGAGCcacGGCGuCa -3' miRNA: 3'- -GUGcGGCACCGGGa--CUCGua-CCGCcG- -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 7356 | 0.68 | 0.592288 |
Target: 5'- uCACGCCc---CCUUGGGagGUGGCGGCa -3' miRNA: 3'- -GUGCGGcaccGGGACUCg-UACCGCCG- -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 141417 | 0.69 | 0.502457 |
Target: 5'- uGCaGCCGgguccgggguuccGGCCCUgGAGCucggggGGCGGCc -3' miRNA: 3'- gUG-CGGCa------------CCGGGA-CUCGua----CCGCCG- -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 141111 | 0.69 | 0.502457 |
Target: 5'- uGCaGCCGgguccgggguuccGGCCCUgGAGCucggggGGCGGCc -3' miRNA: 3'- gUG-CGGCa------------CCGGGA-CUCGua----CCGCCG- -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 141824 | 0.69 | 0.502457 |
Target: 5'- uGCaGCCGgguccgggguuccGGCCCUgGAGCucggggGGCGGCc -3' miRNA: 3'- gUG-CGGCa------------CCGGGA-CUCGua----CCGCCG- -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 141722 | 0.69 | 0.502457 |
Target: 5'- uGCaGCCGgguccgggguuccGGCCCUgGAGCucggggGGCGGCc -3' miRNA: 3'- gUG-CGGCa------------CCGGGA-CUCGua----CCGCCG- -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 30802 | 0.69 | 0.521146 |
Target: 5'- cUugGCCGggucuaagguggccUGGCCCgggGuGCGUGGCcaagaggGGCa -3' miRNA: 3'- -GugCGGC--------------ACCGGGa--CuCGUACCG-------CCG- -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 141621 | 0.69 | 0.502457 |
Target: 5'- uGCaGCCGgguccgggguuccGGCCCUgGAGCucggggGGCGGCc -3' miRNA: 3'- gUG-CGGCa------------CCGGGA-CUCGua----CCGCCG- -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 141926 | 0.69 | 0.502457 |
Target: 5'- uGCaGCCGgguccgggguuccGGCCCUgGAGCucggggGGCGGCc -3' miRNA: 3'- gUG-CGGCa------------CCGGGA-CUCGua----CCGCCG- -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 141519 | 0.69 | 0.502457 |
Target: 5'- uGCaGCCGgguccgggguuccGGCCCUgGAGCucggggGGCGGCc -3' miRNA: 3'- gUG-CGGCa------------CCGGGA-CUCGua----CCGCCG- -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 15457 | 0.69 | 0.521146 |
Target: 5'- cUugGCCGggucuaagguggccUGGCCCgggGuGCGUGGCcaagaggGGCa -3' miRNA: 3'- -GugCGGC--------------ACCGGGa--CuCGUACCG-------CCG- -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 141315 | 0.69 | 0.502457 |
Target: 5'- uGCaGCCGgguccgggguuccGGCCCUgGAGCucggggGGCGGCc -3' miRNA: 3'- gUG-CGGCa------------CCGGGA-CUCGua----CCGCCG- -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 141213 | 0.69 | 0.502457 |
Target: 5'- uGCaGCCGgguccgggguuccGGCCCUgGAGCucggggGGCGGCc -3' miRNA: 3'- gUG-CGGCa------------CCGGGA-CUCGua----CCGCCG- -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 143047 | 0.69 | 0.502457 |
Target: 5'- uGCaGCCGgguccgggguuccGGCCCUgGAGCucggggGGCGGCc -3' miRNA: 3'- gUG-CGGCa------------CCGGGA-CUCGua----CCGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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