miRNA display CGI


Results 81 - 100 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33366 5' -61.6 NC_007605.1 + 63586 0.69 0.478613
Target:  5'- gACG-CGUGGCUCUccggcggcgccGGGgGUGGCGGUg -3'
miRNA:   3'- gUGCgGCACCGGGA-----------CUCgUACCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 21595 0.69 0.521146
Target:  5'- cUugGCCGggucuaagguggccUGGCCCgggGuGCGUGGCcaagaggGGCa -3'
miRNA:   3'- -GugCGGC--------------ACCGGGa--CuCGUACCG-------CCG- -5'
33366 5' -61.6 NC_007605.1 + 33871 0.69 0.521146
Target:  5'- cUugGCCGggucuaagguggccUGGCCCgggGuGCGUGGCcaagaggGGCa -3'
miRNA:   3'- -GugCGGC--------------ACCGGGa--CuCGUACCG-------CCG- -5'
33366 5' -61.6 NC_007605.1 + 2889 0.69 0.486805
Target:  5'- gGCGCCGggccgccGCCCUG-GCAUcugcuccggggccGGUGGCg -3'
miRNA:   3'- gUGCGGCac-----CGGGACuCGUA-------------CCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 58891 0.69 0.478613
Target:  5'- cCugGCCGaGGUCCUGcacGGCAguuacaacggGGUGGCc -3'
miRNA:   3'- -GugCGGCaCCGGGAC---UCGUa---------CCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 143047 0.69 0.502457
Target:  5'- uGCaGCCGgguccgggguuccGGCCCUgGAGCucggggGGCGGCc -3'
miRNA:   3'- gUG-CGGCa------------CCGGGA-CUCGua----CCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 142945 0.69 0.502457
Target:  5'- uGCaGCCGgguccgggguuccGGCCCUgGAGCucggggGGCGGCc -3'
miRNA:   3'- gUG-CGGCa------------CCGGGA-CUCGua----CCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 142843 0.69 0.502457
Target:  5'- uGCaGCCGgguccgggguuccGGCCCUgGAGCucggggGGCGGCc -3'
miRNA:   3'- gUG-CGGCa------------CCGGGA-CUCGua----CCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 142640 0.69 0.502457
Target:  5'- uGCaGCCGgguccgggguuccGGCCCUgGAGCucggggGGCGGCc -3'
miRNA:   3'- gUG-CGGCa------------CCGGGA-CUCGua----CCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 142538 0.69 0.502457
Target:  5'- uGCaGCCGgguccgggguuccGGCCCUgGAGCucggggGGCGGCc -3'
miRNA:   3'- gUG-CGGCa------------CCGGGA-CUCGua----CCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 142436 0.69 0.502457
Target:  5'- uGCaGCCGgguccgggguuccGGCCCUgGAGCucggggGGCGGCc -3'
miRNA:   3'- gUG-CGGCa------------CCGGGA-CUCGua----CCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 142334 0.69 0.502457
Target:  5'- uGCaGCCGgguccgggguuccGGCCCUgGAGCucggggGGCGGCc -3'
miRNA:   3'- gUG-CGGCa------------CCGGGA-CUCGua----CCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 141926 0.69 0.502457
Target:  5'- uGCaGCCGgguccgggguuccGGCCCUgGAGCucggggGGCGGCc -3'
miRNA:   3'- gUG-CGGCa------------CCGGGA-CUCGua----CCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 141824 0.69 0.502457
Target:  5'- uGCaGCCGgguccgggguuccGGCCCUgGAGCucggggGGCGGCc -3'
miRNA:   3'- gUG-CGGCa------------CCGGGA-CUCGua----CCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 141722 0.69 0.502457
Target:  5'- uGCaGCCGgguccgggguuccGGCCCUgGAGCucggggGGCGGCc -3'
miRNA:   3'- gUG-CGGCa------------CCGGGA-CUCGua----CCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 141621 0.69 0.502457
Target:  5'- uGCaGCCGgguccgggguuccGGCCCUgGAGCucggggGGCGGCc -3'
miRNA:   3'- gUG-CGGCa------------CCGGGA-CUCGua----CCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 141519 0.69 0.502457
Target:  5'- uGCaGCCGgguccgggguuccGGCCCUgGAGCucggggGGCGGCc -3'
miRNA:   3'- gUG-CGGCa------------CCGGGA-CUCGua----CCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 141417 0.69 0.502457
Target:  5'- uGCaGCCGgguccgggguuccGGCCCUgGAGCucggggGGCGGCc -3'
miRNA:   3'- gUG-CGGCa------------CCGGGA-CUCGua----CCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 141315 0.69 0.502457
Target:  5'- uGCaGCCGgguccgggguuccGGCCCUgGAGCucggggGGCGGCc -3'
miRNA:   3'- gUG-CGGCa------------CCGGGA-CUCGua----CCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 141213 0.69 0.502457
Target:  5'- uGCaGCCGgguccgggguuccGGCCCUgGAGCucggggGGCGGCc -3'
miRNA:   3'- gUG-CGGCa------------CCGGGA-CUCGua----CCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.