Results 121 - 129 of 129 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
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P value |
| Predicted miRNA align pattern | |||||||
| 33366 | 5' | -61.6 | NC_007605.1 | + | 54159 | 0.72 | 0.338781 |
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Target: 5'- aGCGCCGaguccgaGGCcagCCUGGGCggGGCGGUu -3' miRNA: 3'- gUGCGGCa------CCG---GGACUCGuaCCGCCG- -5' |
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| 33366 | 5' | -61.6 | NC_007605.1 | + | 2674 | 0.73 | 0.31739 |
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Target: 5'- -cCGCCaccGGCCCcgGAGCAgaugccagGGCGGCg -3' miRNA: 3'- guGCGGca-CCGGGa-CUCGUa-------CCGCCG- -5' |
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| 33366 | 5' | -61.6 | NC_007605.1 | + | 151577 | 0.73 | 0.31739 |
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Target: 5'- cCugGCCGUGGCCagguacGGGC-UGGUGGg -3' miRNA: 3'- -GugCGGCACCGGga----CUCGuACCGCCg -5' |
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| 33366 | 5' | -61.6 | NC_007605.1 | + | 30921 | 0.74 | 0.277701 |
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Target: 5'- -cCGCCGggUGGCCCUGGGUAagucUGGgaGGCa -3' miRNA: 3'- guGCGGC--ACCGGGACUCGU----ACCg-CCG- -5' |
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| 33366 | 5' | -61.6 | NC_007605.1 | + | 59001 | 0.75 | 0.215362 |
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Target: 5'- aGCuCCGUGGUCCUGAGg--GGCGGUg -3' miRNA: 3'- gUGcGGCACCGGGACUCguaCCGCCG- -5' |
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| 33366 | 5' | -61.6 | NC_007605.1 | + | 159923 | 0.76 | 0.210332 |
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Target: 5'- gACGCCGUGGCUCccgGGGCcacgGaGCGGCu -3' miRNA: 3'- gUGCGGCACCGGGa--CUCGua--C-CGCCG- -5' |
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| 33366 | 5' | -61.6 | NC_007605.1 | + | 60288 | 0.76 | 0.205405 |
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Target: 5'- --gGCCGUGGCCa-GGGCccaccUGGCGGCg -3' miRNA: 3'- gugCGGCACCGGgaCUCGu----ACCGCCG- -5' |
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| 33366 | 5' | -61.6 | NC_007605.1 | + | 129540 | 0.77 | 0.177899 |
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Target: 5'- -uUGaCCGUGGCCaucAGCAUGGCGGCc -3' miRNA: 3'- guGC-GGCACCGGgacUCGUACCGCCG- -5' |
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| 33366 | 5' | -61.6 | NC_007605.1 | + | 135016 | 1.09 | 0.00094 |
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Target: 5'- gCACGCCGUGGCCCUGAGCAUGGCGGCc -3' miRNA: 3'- -GUGCGGCACCGGGACUCGUACCGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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