miRNA display CGI


Results 61 - 80 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33366 5' -61.6 NC_007605.1 + 140907 0.69 0.502457
Target:  5'- uGCaGCCGgguccgggguuccGGCCCUgGAGCucggggGGCGGCc -3'
miRNA:   3'- gUG-CGGCa------------CCGGGA-CUCGua----CCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 47266 0.68 0.553504
Target:  5'- gAC-CCGcgaGGCCuuCUGGGCGuUGGCGGCc -3'
miRNA:   3'- gUGcGGCa--CCGG--GACUCGU-ACCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 67686 0.68 0.572819
Target:  5'- -cCGCCGUGGCCaacgcaGGCAcGGCcgGGCu -3'
miRNA:   3'- guGCGGCACCGGgac---UCGUaCCG--CCG- -5'
33366 5' -61.6 NC_007605.1 + 7356 0.68 0.592288
Target:  5'- uCACGCCc---CCUUGGGagGUGGCGGCa -3'
miRNA:   3'- -GUGCGGcaccGGGACUCg-UACCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 63066 0.68 0.582537
Target:  5'- aGgGCUGcUGGCCCcggGGGagGUGGCGGUc -3'
miRNA:   3'- gUgCGGC-ACCGGGa--CUCg-UACCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 4047 0.68 0.542963
Target:  5'- cUACGCgCGUGG-CCUGGGCGugaagcugaccuuUGGCucGGCc -3'
miRNA:   3'- -GUGCG-GCACCgGGACUCGU-------------ACCG--CCG- -5'
33366 5' -61.6 NC_007605.1 + 54025 0.68 0.534388
Target:  5'- -cCGCCcUGGCCC-GGGCA--GCGGCc -3'
miRNA:   3'- guGCGGcACCGGGaCUCGUacCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 159723 0.68 0.582537
Target:  5'- cCGCuCCGUGGCCCcggGAGCcacGGCGuCa -3'
miRNA:   3'- -GUGcGGCACCGGGa--CUCGua-CCGCcG- -5'
33366 5' -61.6 NC_007605.1 + 115509 0.67 0.611865
Target:  5'- aGgGCCGgGGCCgaGAcCAaGGCGGCu -3'
miRNA:   3'- gUgCGGCaCCGGgaCUcGUaCCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 136548 0.67 0.615788
Target:  5'- cUACGCCG-GGCCCgcGGGCggGGacccgggugccuucuUGGCg -3'
miRNA:   3'- -GUGCGGCaCCGGGa-CUCGuaCC---------------GCCG- -5'
33366 5' -61.6 NC_007605.1 + 4407 0.67 0.621677
Target:  5'- cCugGUgGagaUGGCCCUG-GCcgGGCaGCg -3'
miRNA:   3'- -GugCGgC---ACCGGGACuCGuaCCGcCG- -5'
33366 5' -61.6 NC_007605.1 + 133048 0.67 0.618732
Target:  5'- aACGCCGccaagacuuccaGGCCCUGAcugcccaGCAcggGGgGGCa -3'
miRNA:   3'- gUGCGGCa-----------CCGGGACU-------CGUa--CCgCCG- -5'
33366 5' -61.6 NC_007605.1 + 136530 0.67 0.621677
Target:  5'- gACGCUGaugaGGUCCUG-GCccgcGGCGGCc -3'
miRNA:   3'- gUGCGGCa---CCGGGACuCGua--CCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 73603 0.67 0.631497
Target:  5'- --gGaCGUGGCCCggGAGC-UGGUGGa -3'
miRNA:   3'- gugCgGCACCGGGa-CUCGuACCGCCg -5'
33366 5' -61.6 NC_007605.1 + 10200 0.67 0.651131
Target:  5'- aAC-CUGUGGCaCCUGcGCA-GGCGGa -3'
miRNA:   3'- gUGcGGCACCG-GGACuCGUaCCGCCg -5'
33366 5' -61.6 NC_007605.1 + 151530 0.67 0.641317
Target:  5'- -cCGCCGUGaacucuGCCCUucaGuGUcUGGCGGCc -3'
miRNA:   3'- guGCGGCAC------CGGGA---CuCGuACCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 77601 0.67 0.651131
Target:  5'- cUugGCUgGUGGUgCCUGGGCggGGUgcuGGCg -3'
miRNA:   3'- -GugCGG-CACCG-GGACUCGuaCCG---CCG- -5'
33366 5' -61.6 NC_007605.1 + 106121 0.67 0.641317
Target:  5'- gACuCagaGUGcCUCUGAGCAUGGgGGCa -3'
miRNA:   3'- gUGcGg--CACcGGGACUCGUACCgCCG- -5'
33366 5' -61.6 NC_007605.1 + 63023 0.67 0.631497
Target:  5'- aCGCGCa--GGCCuccucgCUGAGUgcGGCGGCc -3'
miRNA:   3'- -GUGCGgcaCCGG------GACUCGuaCCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 107408 0.67 0.625605
Target:  5'- aGCGUguuCcUGGCCCUGGGCAacagcuuuuacuuuaUGGUGGg -3'
miRNA:   3'- gUGCG---GcACCGGGACUCGU---------------ACCGCCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.