miRNA display CGI


Results 1 - 20 of 129 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
33366 5' -61.6 NC_007605.1 + 135016 1.09 0.00094
Target:  5'- gCACGCCGUGGCCCUGAGCAUGGCGGCc -3'
miRNA:   3'- -GUGCGGCACCGGGACUCGUACCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 129540 0.77 0.177899
Target:  5'- -uUGaCCGUGGCCaucAGCAUGGCGGCc -3'
miRNA:   3'- guGC-GGCACCGGgacUCGUACCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 60288 0.76 0.205405
Target:  5'- --gGCCGUGGCCa-GGGCccaccUGGCGGCg -3'
miRNA:   3'- gugCGGCACCGGgaCUCGu----ACCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 159923 0.76 0.210332
Target:  5'- gACGCCGUGGCUCccgGGGCcacgGaGCGGCu -3'
miRNA:   3'- gUGCGGCACCGGGa--CUCGua--C-CGCCG- -5'
33366 5' -61.6 NC_007605.1 + 59001 0.75 0.215362
Target:  5'- aGCuCCGUGGUCCUGAGg--GGCGGUg -3'
miRNA:   3'- gUGcGGCACCGGGACUCguaCCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 30921 0.74 0.277701
Target:  5'- -cCGCCGggUGGCCCUGGGUAagucUGGgaGGCa -3'
miRNA:   3'- guGCGGC--ACCGGGACUCGU----ACCg-CCG- -5'
33366 5' -61.6 NC_007605.1 + 2674 0.73 0.31739
Target:  5'- -cCGCCaccGGCCCcgGAGCAgaugccagGGCGGCg -3'
miRNA:   3'- guGCGGca-CCGGGa-CUCGUa-------CCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 151577 0.73 0.31739
Target:  5'- cCugGCCGUGGCCagguacGGGC-UGGUGGg -3'
miRNA:   3'- -GugCGGCACCGGga----CUCGuACCGCCg -5'
33366 5' -61.6 NC_007605.1 + 159994 0.72 0.331536
Target:  5'- aGCGUCGccUGGCCCUGGuGCG-GGgGGCc -3'
miRNA:   3'- gUGCGGC--ACCGGGACU-CGUaCCgCCG- -5'
33366 5' -61.6 NC_007605.1 + 54159 0.72 0.338781
Target:  5'- aGCGCCGaguccgaGGCcagCCUGGGCggGGCGGUu -3'
miRNA:   3'- gUGCGGCa------CCG---GGACUCGuaCCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 162760 0.72 0.353614
Target:  5'- aCACgGCCGgggcccGGCCCUcgcagagcGAGCAcaugggacUGGCGGCc -3'
miRNA:   3'- -GUG-CGGCa-----CCGGGA--------CUCGU--------ACCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 61620 0.71 0.392662
Target:  5'- -cCGCCGcgacGGCUgUGGGUGUGGgGGCg -3'
miRNA:   3'- guGCGGCa---CCGGgACUCGUACCgCCG- -5'
33366 5' -61.6 NC_007605.1 + 122137 0.71 0.400802
Target:  5'- uGCGCauaacaaagGUGGCaacauCCUGGuGCAUGGUGGCa -3'
miRNA:   3'- gUGCGg--------CACCG-----GGACU-CGUACCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 71592 0.71 0.409048
Target:  5'- cCACGCUGgagGGCCgUGcaGGUAUGGCgugGGCc -3'
miRNA:   3'- -GUGCGGCa--CCGGgAC--UCGUACCG---CCG- -5'
33366 5' -61.6 NC_007605.1 + 133224 0.71 0.417399
Target:  5'- gGgGCCuGUGuCCCUGGGCAgucgGGCGGg -3'
miRNA:   3'- gUgCGG-CACcGGGACUCGUa---CCGCCg -5'
33366 5' -61.6 NC_007605.1 + 62244 0.7 0.425853
Target:  5'- aGCGUgGUGGCCucgCUGccccuGGCccGGCGGCg -3'
miRNA:   3'- gUGCGgCACCGG---GAC-----UCGuaCCGCCG- -5'
33366 5' -61.6 NC_007605.1 + 33989 0.7 0.440455
Target:  5'- -cCGCCGggUGGCCCUGggguaagucugggaGGCAgagGGuCGGCc -3'
miRNA:   3'- guGCGGC--ACCGGGAC--------------UCGUa--CC-GCCG- -5'
33366 5' -61.6 NC_007605.1 + 27852 0.7 0.440455
Target:  5'- -cCGCCGggUGGCCCUGggguaagucugggaGGCAgagGGuCGGCc -3'
miRNA:   3'- guGCGGC--ACCGGGAC--------------UCGUa--CC-GCCG- -5'
33366 5' -61.6 NC_007605.1 + 24783 0.7 0.440455
Target:  5'- -cCGCCGggUGGCCCUGggguaagucugggaGGCAgagGGuCGGCc -3'
miRNA:   3'- guGCGGC--ACCGGGAC--------------UCGUa--CC-GCCG- -5'
33366 5' -61.6 NC_007605.1 + 21714 0.7 0.440455
Target:  5'- -cCGCCGggUGGCCCUGggguaagucugggaGGCAgagGGuCGGCc -3'
miRNA:   3'- guGCGGC--ACCGGGAC--------------UCGUa--CC-GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.