Results 21 - 40 of 129 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
33366 | 5' | -61.6 | NC_007605.1 | + | 38266 | 0.66 | 0.708496 |
Target: 5'- gGCaGCCGgGGuUCCUGgcgcuccgggggcAGCcgGGCGGCc -3' miRNA: 3'- gUG-CGGCaCC-GGGAC-------------UCGuaCCGCCG- -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 53822 | 0.66 | 0.699839 |
Target: 5'- --aGCCGUucccGGCCgCUGcccgGGCcagGGCGGCc -3' miRNA: 3'- gugCGGCA----CCGG-GAC----UCGua-CCGCCG- -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 1761 | 0.66 | 0.699839 |
Target: 5'- aAUGCCGguuGCCC--GGUAUGGgGGCc -3' miRNA: 3'- gUGCGGCac-CGGGacUCGUACCgCCG- -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 61734 | 0.66 | 0.699839 |
Target: 5'- ---aCCGUGGCCaccuGCucgAUGGCGGCu -3' miRNA: 3'- gugcGGCACCGGgacuCG---UACCGCCG- -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 160883 | 0.66 | 0.699839 |
Target: 5'- gUACGCCcUGGCgguugagCUGAGCGUGuGCacccGGCg -3' miRNA: 3'- -GUGCGGcACCGg------GACUCGUAC-CG----CCG- -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 87534 | 0.66 | 0.698875 |
Target: 5'- uGCGCUucacuggGUGcGUCUUGGGCGUGGgccaaGGCa -3' miRNA: 3'- gUGCGG-------CAC-CGGGACUCGUACCg----CCG- -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 160196 | 0.66 | 0.690171 |
Target: 5'- gGCGCgGUcccgGGCCCgGGGCGgccGGaGGCa -3' miRNA: 3'- gUGCGgCA----CCGGGaCUCGUa--CCgCCG- -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 19890 | 0.66 | 0.690171 |
Target: 5'- gAgGCUG-GGCCCggGAGCcGUGGacgGGCg -3' miRNA: 3'- gUgCGGCaCCGGGa-CUCG-UACCg--CCG- -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 22959 | 0.66 | 0.690171 |
Target: 5'- gAgGCUG-GGCCCggGAGCcGUGGacgGGCg -3' miRNA: 3'- gUgCGGCaCCGGGa-CUCG-UACCg--CCG- -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 16821 | 0.66 | 0.690171 |
Target: 5'- gAgGCUG-GGCCCggGAGCcGUGGacgGGCg -3' miRNA: 3'- gUgCGGCaCCGGGa-CUCG-UACCg--CCG- -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 32165 | 0.66 | 0.690171 |
Target: 5'- gAgGCUG-GGCCCggGAGCcGUGGacgGGCg -3' miRNA: 3'- gUgCGGCaCCGGGa-CUCG-UACCg--CCG- -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 47523 | 0.66 | 0.690171 |
Target: 5'- uCACgGCCGUGGCCCUGcuccugauGUuucugaGGUGGa -3' miRNA: 3'- -GUG-CGGCACCGGGACu-------CGua----CCGCCg -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 120231 | 0.66 | 0.690171 |
Target: 5'- gGCGCauacUGGCCCUGGGCAgcagGGUc-- -3' miRNA: 3'- gUGCGgc--ACCGGGACUCGUa---CCGccg -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 29097 | 0.66 | 0.690171 |
Target: 5'- gAgGCUG-GGCCCggGAGCcGUGGacgGGCg -3' miRNA: 3'- gUgCGGCaCCGGGa-CUCG-UACCg--CCG- -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 13752 | 0.66 | 0.690171 |
Target: 5'- gAgGCUG-GGCCCggGAGCcGUGGacgGGCg -3' miRNA: 3'- gUgCGGCaCCGGGa-CUCG-UACCg--CCG- -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 35234 | 0.66 | 0.690171 |
Target: 5'- gAgGCUG-GGCCCggGAGCcGUGGacgGGCg -3' miRNA: 3'- gUgCGGCaCCGGGa-CUCG-UACCg--CCG- -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 26028 | 0.66 | 0.690171 |
Target: 5'- gAgGCUG-GGCCCggGAGCcGUGGacgGGCg -3' miRNA: 3'- gUgCGGCaCCGGGa-CUCG-UACCg--CCG- -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 150994 | 0.66 | 0.680458 |
Target: 5'- gCGgGCCGaggggaugUGGCCCUGAGuCAgucccgGGCucugcucuGGCg -3' miRNA: 3'- -GUgCGGC--------ACCGGGACUC-GUa-----CCG--------CCG- -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 137440 | 0.66 | 0.680458 |
Target: 5'- uGgGCUGacacagacuUGGCCUUGGGgGUGGUGGg -3' miRNA: 3'- gUgCGGC---------ACCGGGACUCgUACCGCCg -5' |
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33366 | 5' | -61.6 | NC_007605.1 | + | 48465 | 0.66 | 0.680458 |
Target: 5'- gGgGCCGgggGGCCCugccUGAGCcgGGauguuuucgUGGCg -3' miRNA: 3'- gUgCGGCa--CCGGG----ACUCGuaCC---------GCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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